Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08935

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,647,073	+				-0.4
1,647,094	-				+0.4
1,647,095	+				-0.9
1,647,099	-				+2.8
1,647,108	-				-0.4
1,647,121	-				+0.5
1,647,121	-				+0.0
1,647,121	-				+5.8
1,647,121	-				+0.4
1,647,122	+				+1.2
1,647,122	+				-1.9
1,647,126	-				+0.2
1,647,131	+				-3.9
1,647,137	-				+0.1
1,647,137	-				+1.5
1,647,137	-				-0.4
1,647,140	-				-0.3
1,647,140	-				+2.4
1,647,141	+				+0.9
1,647,141	+				-1.8
1,647,141	+				-0.5
1,647,141	+				-1.4
1,647,141	+				-3.8
1,647,149	-				+0.2
1,647,150	+				-0.1
1,647,150	+				+0.6
1,647,155	-				-1.6
1,647,156	+				+4.0
1,647,156	+				-3.0
1,647,173	-				-3.3
1,647,202	+				+1.8
1,647,218	-				-0.4
1,647,251	-				+2.6
1,647,270	+				-1.1
1,647,270	+				-0.4
1,647,270	+				-1.8
1,647,270	+				-1.4
1,647,341	-		MMJJ_RS08930	0.18	+0.1
1,647,360	-		MMJJ_RS08930	0.21	-0.7
1,647,360	-		MMJJ_RS08930	0.21	+2.3
1,647,401	+		MMJJ_RS08930	0.26	+1.4
1,647,407	-		MMJJ_RS08930	0.27	+0.2
1,647,438	+		MMJJ_RS08930	0.30	-2.1
1,647,444	+		MMJJ_RS08930	0.31	-2.5
1,647,472	-		MMJJ_RS08930	0.35	-2.3
1,647,472	-		MMJJ_RS08930	0.35	-1.0
1,647,476	-		MMJJ_RS08930	0.35	-2.6
1,647,477	+		MMJJ_RS08930	0.35	-0.3
1,647,519	-		MMJJ_RS08930	0.41	+1.1
1,647,723	+		MMJJ_RS08930	0.66	+0.9
1,647,751	+		MMJJ_RS08930	0.70	-2.1
1,647,783	-		MMJJ_RS08930	0.74	-1.2
1,647,787	-		MMJJ_RS08930	0.74	-2.6
1,647,788	+		MMJJ_RS08930	0.74	+0.2
1,647,788	+		MMJJ_RS08930	0.74	-1.4
1,647,884	-		MMJJ_RS08930	0.87	-0.5
1,647,885	+		MMJJ_RS08930	0.87	+0.7
1,647,885	+		MMJJ_RS08930	0.87	+0.4
1,647,886	-		MMJJ_RS08930	0.87	-1.5
1,647,886	-		MMJJ_RS08930	0.87	-1.8
1,647,887	+		MMJJ_RS08930	0.87	-0.3
1,647,927	-				-2.0
1,647,928	+				-0.8
1,647,939	-				-0.8
1,648,014	+				+0.2
1,648,023	+				+1.2
1,648,064	-				-1.1
1,648,367	+		MMJJ_RS08935	0.46	+1.2
1,648,515	-				+1.2
1,648,589	+		MMJJ_RS08935	0.81	-2.6
1,648,672	-				-2.1
1,648,672	-				-0.7
1,648,696	+				-0.6
1,648,733	-				+4.5
1,648,734	+				-1.8
1,648,734	+				-1.4
1,648,738	+				+0.2
1,648,742	-				-0.6
1,648,751	-				+3.4
1,648,752	+				-2.9
1,648,754	+				+3.8
1,648,877	+		MMJJ_RS08940	0.47	+0.6
1,648,924	-		MMJJ_RS08940	0.64	+0.2
1,648,925	+		MMJJ_RS08940	0.65	-0.8
1,649,000	-				+0.2
1,649,006	+				+0.7
1,649,030	+				-0.4
1,649,071	-		MMJJ_RS09375	0.21	+0.0
1,649,105	-		MMJJ_RS09375	0.41	-1.4
1,649,107	-				+0.2
1,649,112	+				+0.2
1,649,123	-		MMJJ_RS09375	0.51	-0.8
1,649,218	-				-0.9
1,649,222	-				+2.2
1,649,229	-				-1.1
1,649,238	-				-1.6
1,649,252	-				-1.2
1,649,253	+				-2.1
1,649,304	-		MMJJ_RS08945	0.22	-2.5
1,649,306	-		MMJJ_RS08945	0.23	+0.2
1,649,307	+		MMJJ_RS08945	0.23	-0.6
1,649,380	+				-0.4
1,649,418	-		MMJJ_RS08945	0.52	+1.0
1,649,419	+		MMJJ_RS08945	0.52	-2.7
1,649,419	+		MMJJ_RS08945	0.52	+0.3
1,649,419	+		MMJJ_RS08945	0.52	-0.0
1,649,421	-		MMJJ_RS08945	0.52	+0.2
1,649,424	-		MMJJ_RS08945	0.53	-0.9
1,649,424	-		MMJJ_RS08945	0.53	-1.4
1,649,425	+		MMJJ_RS08945	0.53	+1.7
1,649,425	+		MMJJ_RS08945	0.53	-0.4
1,649,436	-		MMJJ_RS08945	0.56	-3.1
1,649,436	-		MMJJ_RS08945	0.56	+1.0
1,649,437	+		MMJJ_RS08945	0.56	-0.8
1,649,437	+		MMJJ_RS08945	0.56	-2.6
1,649,509	+		MMJJ_RS08945	0.75	-0.8
1,649,523	+		MMJJ_RS08945	0.78	-2.2
1,649,624	+				-0.5
1,649,634	+				-1.5
1,649,644	+				+3.3
1,649,655	-				-1.8
1,649,655	-				-0.5
1,649,659	-				+3.9
1,649,659	-				-2.4
1,649,660	+				-1.6
1,649,678	+				-1.6
1,649,680	-				-1.2
1,649,680	-				+0.2
1,649,680	-				-2.2
1,649,681	+				+0.2
1,649,683	-				-1.1
1,649,683	-				-0.6
1,649,684	+				+3.2
1,649,684	+				+1.7
1,649,710	+		MMJJ_RS08950	0.13	-1.9
1,649,712	-		MMJJ_RS08950	0.14	+0.2
1,649,713	+		MMJJ_RS08950	0.14	-1.6