Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08910

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,643,122	-		MMJJ_RS08905	0.19	+1.2
1,643,131	-		MMJJ_RS08905	0.20	+0.8
1,643,132	+		MMJJ_RS08905	0.20	-2.4
1,643,152	-		MMJJ_RS08905	0.22	+2.2
1,643,164	-		MMJJ_RS08905	0.23	+1.7
1,643,164	-		MMJJ_RS08905	0.23	+1.7
1,643,324	+		MMJJ_RS08905	0.36	+1.9
1,643,408	-		MMJJ_RS08905	0.43	-2.1
1,643,409	+		MMJJ_RS08905	0.43	+2.2
1,643,414	+		MMJJ_RS08905	0.44	-0.9
1,643,416	-		MMJJ_RS08905	0.44	-1.4
1,643,486	-		MMJJ_RS08905	0.50	-0.8
1,643,496	-		MMJJ_RS08905	0.50	+0.5
1,643,496	-		MMJJ_RS08905	0.50	-1.4
1,643,687	+		MMJJ_RS08905	0.66	+0.5
1,643,687	+		MMJJ_RS08905	0.66	+2.2
1,643,687	+		MMJJ_RS08905	0.66	-1.6
1,643,719	-		MMJJ_RS08905	0.69	+2.2
1,643,750	-		MMJJ_RS08905	0.72	-0.4
1,643,750	-		MMJJ_RS08905	0.72	+2.8
1,643,751	+		MMJJ_RS08905	0.72	+2.8
1,643,792	-		MMJJ_RS08905	0.75	+1.5
1,643,898	-		MMJJ_RS08905	0.84	+0.1
1,643,898	-		MMJJ_RS08905	0.84	-1.4
1,643,898	-		MMJJ_RS08905	0.84	-1.1
1,643,898	-		MMJJ_RS08905	0.84	-0.0
1,643,899	+		MMJJ_RS08905	0.84	+0.8
1,643,899	+		MMJJ_RS08905	0.84	+4.6
1,643,966	-		MMJJ_RS08905	0.90	+2.8
1,643,966	-		MMJJ_RS08905	0.90	+0.8
1,643,966	-		MMJJ_RS08905	0.90	+1.4
1,643,967	+		MMJJ_RS08905	0.90	-2.6
1,644,008	-				-0.9
1,644,009	+				-0.2
1,644,011	-				-0.9
1,644,055	-				-0.6
1,644,055	-				+1.6
1,644,055	-				+2.1
1,644,055	-				-1.4
1,644,056	+				-0.1
1,644,056	+				+0.4
1,644,056	+				-1.8
1,644,058	+				-0.5
1,644,072	-				+2.9
1,644,072	-				-1.0
1,644,076	-				-1.1
1,644,076	-				+0.7
1,644,076	-				+1.2
1,644,077	+				-1.5
1,644,077	+				-1.1
1,644,102	-				+1.4
1,644,103	+				-0.2
1,644,125	-				+2.2
1,644,126	+				-2.4
1,644,126	+				-0.4
1,644,147	-		MMJJ_RS08910	0.11	-3.2
1,644,167	-		MMJJ_RS08910	0.17	+0.9
1,644,176	-		MMJJ_RS08910	0.20	-1.7
1,644,176	-		MMJJ_RS08910	0.20	-3.3
1,644,176	-		MMJJ_RS08910	0.20	+0.0
1,644,176	-		MMJJ_RS08910	0.20	-3.7
1,644,176	-		MMJJ_RS08910	0.20	-0.7
1,644,176	-		MMJJ_RS08910	0.20	-0.5
1,644,176	-		MMJJ_RS08910	0.20	-2.2
1,644,177	+		MMJJ_RS08910	0.21	-0.4
1,644,177	+		MMJJ_RS08910	0.21	+1.2
1,644,177	+		MMJJ_RS08910	0.21	+0.6
1,644,177	+		MMJJ_RS08910	0.21	-1.0
1,644,180	-		MMJJ_RS08910	0.22	+0.6
1,644,181	+		MMJJ_RS08910	0.22	+1.2
1,644,219	-		MMJJ_RS08910	0.34	+1.8
1,644,219	-		MMJJ_RS08910	0.34	-0.3
1,644,220	+		MMJJ_RS08910	0.35	-1.4
1,644,253	+		MMJJ_RS08910	0.45	-0.8
1,644,293	-		MMJJ_RS08910	0.58	-1.5
1,644,301	+		MMJJ_RS08910	0.61	+1.4
1,644,306	-		MMJJ_RS08910	0.63	-0.9
1,644,359	-		MMJJ_RS08910	0.80	-3.0
1,644,360	+		MMJJ_RS08910	0.80	-0.4
1,644,360	+		MMJJ_RS08910	0.80	+0.3
1,644,362	-		MMJJ_RS08910	0.81	-1.0
1,644,379	+		MMJJ_RS08910	0.87	+0.9
1,644,433	-				+0.1
1,644,434	+				-2.2
1,644,438	+				-0.2
1,644,440	-				-0.9
1,644,455	-				+1.2
1,644,456	+				-2.7
1,644,456	+				-0.5
1,644,495	+				+2.0
1,644,507	-				-1.6
1,644,511	-				+1.7
1,644,511	-				-0.0
1,644,511	-				+2.6
1,644,511	-				+1.5
1,644,511	-				+2.2
1,644,511	-				-1.1
1,644,512	+				-0.8
1,644,512	+				-0.3
1,644,513	-				+1.2
1,644,516	-				+0.3
1,644,516	-				+1.3
1,644,516	-				-1.4
1,644,516	-				-0.2
1,644,516	-				-0.4
1,644,517	+				+4.1
1,644,518	-				+1.0
1,644,518	-				+0.1
1,644,518	-				-2.7
1,644,518	-				+4.1
1,644,518	-				-1.8
1,644,519	+				+1.6
1,644,519	+				+1.2
1,644,519	+				+0.9
1,644,520	-				-0.8
1,644,520	-				-2.5
1,644,521	+				-0.4
1,644,521	+				-0.8
1,644,521	+				+2.0
1,644,670	-		MMJJ_RS08915	0.21	+0.1
1,644,723	-		MMJJ_RS08915	0.31	-1.9
1,644,723	-		MMJJ_RS08915	0.31	+1.2
1,644,724	+		MMJJ_RS08915	0.31	-1.0
1,644,781	-		MMJJ_RS08915	0.41	-2.9
1,644,906	-		MMJJ_RS08915	0.64	+0.3
1,644,906	-		MMJJ_RS08915	0.64	+1.2
1,644,907	+		MMJJ_RS08915	0.64	+1.3
1,644,907	+		MMJJ_RS08915	0.64	-0.4
1,644,907	+		MMJJ_RS08915	0.64	-0.6
1,644,907	+		MMJJ_RS08915	0.64	-1.6
1,644,908	-		MMJJ_RS08915	0.64	+1.2
1,644,908	-		MMJJ_RS08915	0.64	+0.0
1,644,909	+		MMJJ_RS08915	0.65	+1.6
1,644,916	+		MMJJ_RS08915	0.66	+1.7
1,644,916	+		MMJJ_RS08915	0.66	+0.4
1,645,108	-				+5.2
1,645,109	+				+0.6
1,645,124	-				+0.8
1,645,178	-				-3.9
1,645,179	+				+2.0
1,645,179	+				+0.6
1,645,203	+				-1.9
1,645,241	+		MMJJ_RS08920	0.11	+1.7
1,645,359	+		MMJJ_RS08920	0.25	+0.0
1,645,359	+		MMJJ_RS08920	0.25	-0.1
1,645,370	+		MMJJ_RS08920	0.26	+0.4
1,645,370	+		MMJJ_RS08920	0.26	+0.7
1,645,370	+		MMJJ_RS08920	0.26	-0.0
1,645,414	-		MMJJ_RS08920	0.31	-2.7