Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08870

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,633,638	+		MMJJ_RS08860	0.34	-1.9
1,633,684	+		MMJJ_RS08860	0.44	+1.2
1,633,715	-		MMJJ_RS08860	0.51	+2.4
1,633,716	+		MMJJ_RS08860	0.52	+0.2
1,633,733	+				-0.4
1,633,832	-		MMJJ_RS08860	0.78	+0.8
1,633,838	+		MMJJ_RS08860	0.80	-1.6
1,633,908	+				-0.0
1,633,922	+				+1.2
1,633,945	-				+1.1
1,633,945	-				+2.1
1,633,951	+				+4.1
1,634,036	-		MMJJ_RS08865	0.20	+2.1
1,634,037	+		MMJJ_RS08865	0.20	+1.8
1,634,050	+		MMJJ_RS08865	0.23	+2.7
1,634,127	-		MMJJ_RS08865	0.36	+0.6
1,634,128	+		MMJJ_RS08865	0.37	+3.6
1,634,128	+		MMJJ_RS08865	0.37	+0.4
1,634,129	-		MMJJ_RS08865	0.37	+0.9
1,634,129	-		MMJJ_RS08865	0.37	+0.0
1,634,129	-		MMJJ_RS08865	0.37	+0.5
1,634,129	-		MMJJ_RS08865	0.37	-0.0
1,634,129	-		MMJJ_RS08865	0.37	+2.6
1,634,130	+		MMJJ_RS08865	0.37	+1.7
1,634,130	+		MMJJ_RS08865	0.37	-3.9
1,634,130	+		MMJJ_RS08865	0.37	-1.9
1,634,130	+		MMJJ_RS08865	0.37	+1.2
1,634,130	+		MMJJ_RS08865	0.37	-0.4
1,634,138	-		MMJJ_RS08865	0.38	-1.1
1,634,138	-		MMJJ_RS08865	0.38	-0.9
1,634,139	+		MMJJ_RS08865	0.38	+1.9
1,634,139	+		MMJJ_RS08865	0.38	-0.6
1,634,139	+		MMJJ_RS08865	0.38	-1.3
1,634,211	-		MMJJ_RS08865	0.51	-0.7
1,634,212	+		MMJJ_RS08865	0.51	-0.4
1,634,212	+		MMJJ_RS08865	0.51	-0.5
1,634,217	+		MMJJ_RS08865	0.52	+1.8
1,634,217	+		MMJJ_RS08865	0.52	+0.2
1,634,222	+		MMJJ_RS08865	0.53	+1.5
1,634,356	+		MMJJ_RS08865	0.77	-0.9
1,634,451	+				-1.9
1,634,454	-				+2.5
1,634,521	-				-0.2
1,634,521	-				-3.2
1,634,521	-				-3.8
1,634,522	+				+4.1
1,634,522	+				-1.4
1,634,522	+				-4.1
1,634,590	-				+1.2
1,634,595	-				-0.7
1,634,626	-				-0.8
1,634,685	-				+0.2
1,635,005	+		MMJJ_RS08870	0.25	-1.5
1,636,074	-				+1.2
1,636,075	+				+1.6
1,636,246	-				+0.5
1,636,246	-				+0.2
1,636,247	+				-0.1
1,636,268	-				-0.1
1,636,268	-				+2.6
1,636,268	-				+1.6
1,636,268	-				+2.2
1,636,268	-				-0.8
1,636,268	-				+0.4
1,636,268	-				+3.9
1,636,268	-				-3.4
1,636,268	-				-2.1
1,636,268	-				-0.9
1,636,268	-				-3.4
1,636,268	-				-2.9
1,636,268	-				+1.6
1,636,269	+				-1.6
1,636,269	+				-1.8
1,636,269	+				+3.6
1,636,269	+				+1.8
1,636,269	+				+1.8
1,636,269	+				-0.9
1,636,269	+				+0.2
1,636,269	+				-0.3
1,636,269	+				-1.3
1,636,269	+				-2.2
1,636,269	+				+0.2
1,636,269	+				-2.2
1,636,269	+				-3.8
1,636,269	+				-0.6
1,636,273	+				+0.1
1,636,302	-				-1.1
1,636,303	+				-1.6
1,636,303	+				+1.7
1,636,306	-				+1.2
1,636,306	-				-0.7
1,636,307	+				+1.4
1,636,307	+				-0.8
1,636,317	-				-3.1
1,636,318	+				-0.4
1,636,318	+				+1.8
1,636,318	+				+2.1
1,636,319	-				+0.2
1,636,349	-				-0.2
1,636,386	-				-2.4
1,636,400	-				+4.6
1,636,400	-				+2.8
1,636,403	+				-2.3
1,636,406	-				-0.1
1,636,442	-		MMJJ_RS08875	0.11	+1.2
1,636,456	-		MMJJ_RS08875	0.11	-1.8
1,636,469	+		MMJJ_RS08875	0.12	-0.3
1,636,473	+		MMJJ_RS08875	0.12	+1.5
1,636,473	+		MMJJ_RS08875	0.12	-3.1
1,636,525	-		MMJJ_RS08875	0.15	+0.6
1,636,525	-		MMJJ_RS08875	0.15	+2.8
1,636,547	-		MMJJ_RS08875	0.16	-1.1
1,636,549	-		MMJJ_RS08875	0.16	-0.8
1,636,549	-		MMJJ_RS08875	0.16	+2.2
1,636,549	-		MMJJ_RS08875	0.16	-3.7
1,636,550	+		MMJJ_RS08875	0.17	-1.6
1,636,550	+		MMJJ_RS08875	0.17	+0.2
1,636,550	+		MMJJ_RS08875	0.17	-2.4
1,636,572	-		MMJJ_RS08875	0.18	-0.8
1,636,637	-		MMJJ_RS08875	0.21	-2.7
1,636,638	+		MMJJ_RS08875	0.21	-1.8
1,636,640	-		MMJJ_RS08875	0.21	+0.2
1,636,640	-		MMJJ_RS08875	0.21	-2.5
1,636,641	+		MMJJ_RS08875	0.21	+1.0
1,636,643	+		MMJJ_RS08875	0.22	+1.2
1,636,648	+		MMJJ_RS08875	0.22	+0.1
1,636,658	-		MMJJ_RS08875	0.22	-3.7
1,636,659	+		MMJJ_RS08875	0.22	+1.6
1,636,669	-		MMJJ_RS08875	0.23	+2.9
1,636,669	-		MMJJ_RS08875	0.23	+1.7
1,636,669	-		MMJJ_RS08875	0.23	-1.0
1,636,669	-		MMJJ_RS08875	0.23	-0.3
1,636,669	-		MMJJ_RS08875	0.23	-2.5
1,636,669	-		MMJJ_RS08875	0.23	+0.2
1,636,670	+		MMJJ_RS08875	0.23	-0.9
1,636,670	+		MMJJ_RS08875	0.23	-3.6
1,636,670	+		MMJJ_RS08875	0.23	+1.6
1,636,718	+		MMJJ_RS08875	0.26	-0.2
1,636,718	+		MMJJ_RS08875	0.26	-0.1
1,636,719	-		MMJJ_RS08875	0.26	+1.2
1,636,720	+		MMJJ_RS08875	0.26	+2.5
1,636,720	+		MMJJ_RS08875	0.26	-1.1
1,636,720	+		MMJJ_RS08875	0.26	+1.4
1,636,748	-		MMJJ_RS08875	0.27	-0.8
1,636,748	-		MMJJ_RS08875	0.27	-1.9
1,636,748	-		MMJJ_RS08875	0.27	-1.1
1,636,748	-		MMJJ_RS08875	0.27	+2.0
1,636,748	-		MMJJ_RS08875	0.27	-2.1
1,636,749	+		MMJJ_RS08875	0.27	+1.4
1,636,749	+		MMJJ_RS08875	0.27	+2.1
1,636,749	+		MMJJ_RS08875	0.27	+0.9
1,636,753	-		MMJJ_RS08875	0.28	-1.9
1,636,754	+		MMJJ_RS08875	0.28	+1.7
1,636,761	-		MMJJ_RS08875	0.28	-1.9
1,636,761	-		MMJJ_RS08875	0.28	-0.4
1,636,762	+		MMJJ_RS08875	0.28	-1.0
1,636,762	+		MMJJ_RS08875	0.28	-2.7
1,636,794	-		MMJJ_RS08875	0.30	-3.8
1,636,835	+		MMJJ_RS08875	0.32	-0.9
1,637,008	-		MMJJ_RS08875	0.41	+0.1
1,637,010	-		MMJJ_RS08875	0.41	+1.2
1,637,010	-		MMJJ_RS08875	0.41	-0.1
1,637,011	+		MMJJ_RS08875	0.42	-1.6
1,637,036	+		MMJJ_RS08875	0.43	+1.0
1,637,094	+		MMJJ_RS08875	0.46	+1.7
1,637,103	-		MMJJ_RS08875	0.47	-0.1
1,637,143	-		MMJJ_RS08875	0.49	+0.9
1,637,144	+		MMJJ_RS08875	0.49	-2.8
1,637,150	+		MMJJ_RS08875	0.49	-0.7