Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08850

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,630,430	-		MMJJ_RS08845	0.73	-3.0
1,630,431	+		MMJJ_RS08845	0.73	-0.3
1,630,431	+		MMJJ_RS08845	0.73	+1.3
1,630,435	+		MMJJ_RS08845	0.73	-3.2
1,630,435	+		MMJJ_RS08845	0.73	+1.9
1,630,435	+		MMJJ_RS08845	0.73	+4.7
1,630,443	-		MMJJ_RS08845	0.73	+0.8
1,630,447	-		MMJJ_RS08845	0.73	-2.1
1,630,447	-		MMJJ_RS08845	0.73	-0.1
1,630,448	+		MMJJ_RS08845	0.73	+0.5
1,630,448	+		MMJJ_RS08845	0.73	+0.5
1,630,448	+		MMJJ_RS08845	0.73	+3.6
1,630,449	-		MMJJ_RS08845	0.73	+2.6
1,630,449	-		MMJJ_RS08845	0.73	+3.8
1,630,449	-		MMJJ_RS08845	0.73	+0.8
1,630,456	-		MMJJ_RS08845	0.74	+2.3
1,630,456	-		MMJJ_RS08845	0.74	+2.7
1,630,457	+		MMJJ_RS08845	0.74	-0.4
1,630,471	-		MMJJ_RS08845	0.74	+3.4
1,630,471	-		MMJJ_RS08845	0.74	+0.4
1,630,500	-		MMJJ_RS08845	0.75	+3.4
1,630,507	-		MMJJ_RS08845	0.75	+1.8
1,630,509	-		MMJJ_RS08845	0.75	-1.2
1,630,509	-		MMJJ_RS08845	0.75	-0.8
1,630,509	-		MMJJ_RS08845	0.75	+0.3
1,630,509	-		MMJJ_RS08845	0.75	-0.4
1,630,509	-		MMJJ_RS08845	0.75	+0.4
1,630,509	-		MMJJ_RS08845	0.75	+0.3
1,630,509	-		MMJJ_RS08845	0.75	+3.7
1,630,510	+		MMJJ_RS08845	0.75	+0.2
1,630,510	+		MMJJ_RS08845	0.75	+1.4
1,630,510	+		MMJJ_RS08845	0.75	-2.5
1,630,510	+		MMJJ_RS08845	0.75	-1.8
1,630,510	+		MMJJ_RS08845	0.75	+3.9
1,630,510	+		MMJJ_RS08845	0.75	-3.4
1,630,510	+		MMJJ_RS08845	0.75	+2.5
1,630,510	+		MMJJ_RS08845	0.75	-1.3
1,630,510	+		MMJJ_RS08845	0.75	-1.5
1,630,510	+		MMJJ_RS08845	0.75	-0.6
1,630,510	+		MMJJ_RS08845	0.75	-1.1
1,630,539	-		MMJJ_RS08845	0.76	+1.3
1,630,543	-		MMJJ_RS08845	0.77	+1.3
1,630,543	-		MMJJ_RS08845	0.77	+3.1
1,630,543	-		MMJJ_RS08845	0.77	-2.6
1,630,544	+		MMJJ_RS08845	0.77	-1.5
1,630,544	+		MMJJ_RS08845	0.77	-1.3
1,630,547	-		MMJJ_RS08845	0.77	+0.1
1,630,547	-		MMJJ_RS08845	0.77	-1.3
1,630,562	+		MMJJ_RS08845	0.77	-2.6
1,630,565	-		MMJJ_RS08845	0.77	-1.4
1,630,584	-		MMJJ_RS08845	0.78	+1.6
1,630,584	-		MMJJ_RS08845	0.78	-2.4
1,630,584	-		MMJJ_RS08845	0.78	+3.7
1,630,585	+		MMJJ_RS08845	0.78	-1.4
1,630,585	+		MMJJ_RS08845	0.78	-1.4
1,630,585	+		MMJJ_RS08845	0.78	+0.5
1,630,607	+		MMJJ_RS08845	0.79	+1.1
1,630,611	-		MMJJ_RS08845	0.79	+0.6
1,630,611	-		MMJJ_RS08845	0.79	-2.7
1,630,612	+		MMJJ_RS08845	0.79	+1.1
1,630,612	+		MMJJ_RS08845	0.79	+2.0
1,630,632	-		MMJJ_RS08845	0.79	+0.2
1,630,641	+		MMJJ_RS08845	0.80	-2.6
1,630,654	+		MMJJ_RS08845	0.80	+3.4
1,630,694	-		MMJJ_RS08845	0.81	-3.2
1,630,696	-		MMJJ_RS08845	0.81	-2.6
1,630,718	+		MMJJ_RS08845	0.82	-1.3
1,630,724	-		MMJJ_RS08845	0.82	+0.1
1,630,779	-		MMJJ_RS08845	0.84	+0.7
1,630,779	-		MMJJ_RS08845	0.84	-3.1
1,630,779	-		MMJJ_RS08845	0.84	-0.5
1,630,780	+		MMJJ_RS08845	0.84	-1.1
1,630,821	-		MMJJ_RS08845	0.86	+2.4
1,630,918	+		MMJJ_RS08845	0.89	+3.8
1,630,930	-		MMJJ_RS08845	0.89	+1.4
1,630,930	-		MMJJ_RS08845	0.89	-0.2
1,630,931	+		MMJJ_RS08845	0.89	-2.1
1,630,962	+				-1.4
1,631,132	-				+1.2
1,631,133	+				+1.2
1,631,133	+				+4.3
1,631,133	+				-2.8
1,631,140	-				+0.1
1,631,140	-				+1.1
1,631,141	+				-0.1
1,631,142	-				+0.4
1,631,143	+				+1.2
1,631,143	+				+1.2
1,631,143	+				+1.2
1,631,144	-				-1.6
1,631,145	+				+2.0
1,631,145	+				-1.6
1,631,187	-				+0.7
1,631,266	+				-0.8
1,631,271	+				-2.4
1,631,335	-				+0.8
1,631,336	+				+1.3
1,631,338	+				+2.5
1,631,338	+				+0.5
1,631,338	+				-0.4
1,631,340	+				+0.6
1,631,352	-				-2.2
1,631,353	+				-0.2
1,631,364	+				+2.0
1,631,364	+				-1.5
1,631,412	-				-1.1
1,631,434	-				+1.2
1,631,435	+				-0.4
1,631,984	+		MMJJ_RS08850	0.38	-0.8
1,632,182	-		MMJJ_RS08850	0.52	-0.8
1,632,321	-		MMJJ_RS08850	0.61	-2.1
1,632,322	+				+1.2
1,632,597	-		MMJJ_RS08850	0.79	-0.4
1,632,752	-		MMJJ_RS08850	0.90	+0.2
1,632,752	-		MMJJ_RS08850	0.90	+0.2
1,632,784	+				-1.6
1,632,800	-				-1.4
1,632,899	-				+0.8
1,633,008	+		MMJJ_RS08855	0.19	-0.5
1,633,050	+		MMJJ_RS08855	0.28	+0.2
1,633,139	-		MMJJ_RS08855	0.47	+1.5
1,633,241	-		MMJJ_RS08855	0.69	+0.2
1,633,244	+		MMJJ_RS08855	0.70	+2.7
1,633,376	+				+0.9
1,633,376	+				+0.7
1,633,382	-				+0.7
1,633,384	-				+0.1
1,633,385	+				+0.7
1,633,415	+				-0.2
1,633,421	+				+0.2
1,633,432	-				+0.2
1,633,438	-				+1.2
1,633,439	+				+0.8
1,633,442	-				+1.9
1,633,442	-				-0.4
1,633,442	-				+2.8
1,633,442	-				+1.1
1,633,442	-				+0.2
1,633,443	+				-1.7
1,633,443	+				+1.2
1,633,443	+				+2.2
1,633,443	+				+1.1
1,633,443	+				+0.2
1,633,457	+				+0.3
1,633,460	-				-0.4
1,633,460	-				+0.0
1,633,461	+				-2.2
1,633,461	+				+0.2
1,633,461	+				-1.2
1,633,475	+				-1.8
1,633,509	+				-0.4
1,633,519	-				+1.5
1,633,519	-				+0.4
1,633,523	-				+2.4
1,633,595	-		MMJJ_RS08860	0.24	-0.5
1,633,599	-		MMJJ_RS08860	0.25	+1.8
1,633,599	-		MMJJ_RS08860	0.25	-0.7
1,633,599	-		MMJJ_RS08860	0.25	+1.8
1,633,600	+		MMJJ_RS08860	0.25	+0.8
1,633,602	+		MMJJ_RS08860	0.26	-0.5
1,633,638	+		MMJJ_RS08860	0.34	-1.9
1,633,684	+		MMJJ_RS08860	0.44	+1.2
1,633,715	-		MMJJ_RS08860	0.51	+2.4
1,633,716	+		MMJJ_RS08860	0.52	+0.2
1,633,733	+				-0.4
1,633,832	-		MMJJ_RS08860	0.78	+0.8
1,633,838	+		MMJJ_RS08860	0.80	-1.6