Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08810

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,622,507	-		MMJJ_RS08805	0.17	-2.8
1,622,526	-		MMJJ_RS08805	0.21	+3.8
1,622,527	+		MMJJ_RS08805	0.21	-0.7
1,622,592	+		MMJJ_RS08805	0.35	+1.9
1,622,639	-		MMJJ_RS08805	0.45	-0.8
1,622,641	-		MMJJ_RS08805	0.45	+0.1
1,622,642	+		MMJJ_RS08805	0.45	+1.1
1,622,649	+		MMJJ_RS08805	0.47	+0.3
1,622,779	-		MMJJ_RS08805	0.75	+4.2
1,622,780	+		MMJJ_RS08805	0.75	-1.6
1,622,784	+		MMJJ_RS08805	0.76	+0.2
1,622,784	+		MMJJ_RS08805	0.76	+0.8
1,622,784	+		MMJJ_RS08805	0.76	-1.2
1,622,792	-		MMJJ_RS08805	0.77	+1.0
1,622,793	+		MMJJ_RS08805	0.77	-0.5
1,622,813	+				+1.2
1,622,814	-		MMJJ_RS08805	0.82	+2.9
1,622,814	-		MMJJ_RS08805	0.82	-1.8
1,622,814	-		MMJJ_RS08805	0.82	-1.1
1,622,814	-		MMJJ_RS08805	0.82	+2.6
1,622,815	+		MMJJ_RS08805	0.82	+1.5
1,622,872	-				-1.1
1,622,872	-				+1.0
1,622,882	-				-0.2
1,622,882	-				+0.4
1,622,882	-				-0.8
1,622,883	+				+1.3
1,622,883	+				-0.6
1,622,884	-				+2.8
1,622,955	-				+2.0
1,622,967	-				-1.0
1,622,992	-		MMJJ_RS08810	0.11	-3.2
1,623,363	+		MMJJ_RS08815	0.57	-0.8
1,623,364	-		MMJJ_RS08815	0.57	+0.2
1,623,364	-				+0.2
1,623,452	-				+1.2
1,623,452	-				+1.2
1,623,485	-				+0.0
1,623,509	+				+2.2
1,623,524	-				-1.6
1,623,524	-				+0.6
1,623,524	-				-2.8
1,623,524	-				-0.4
1,623,531	+				-0.8
1,623,538	+				-1.9
1,623,538	+				-1.6
1,623,544	-				-0.1
1,623,554	-				-0.4
1,623,559	-				+1.2
1,623,559	-				-2.0
1,623,576	-				-1.1
1,623,581	-				-0.6
1,623,581	-				-1.6
1,623,581	-				+0.6
1,623,581	-				-1.4
1,623,585	-				-1.5
1,623,585	-				+1.1
1,623,587	-				-0.5
1,623,587	-				+0.2
1,623,587	-				-0.9
1,623,587	-				+0.2
1,623,588	+				+1.2
1,623,588	+				+0.2
1,623,589	-				+1.5
1,623,589	-				-1.1
1,623,590	+				-0.8
1,623,590	+				+0.6
1,623,590	+				-1.6
1,623,608	+				+1.2
1,623,646	-				+0.2
1,623,647	+				+1.6
1,623,647	+				+0.2
1,623,647	+				-0.4
1,623,648	-				-0.8
1,623,648	-				-0.9
1,623,648	-				-0.8
1,623,648	-				-1.2
1,623,648	-				-2.2
1,623,648	-				-1.9
1,623,648	-				+0.2
1,623,649	+				-1.4
1,623,649	+				-1.1
1,623,649	+				+0.2
1,623,649	+				-1.9
1,623,650	-				-2.4
1,623,650	-				-1.8
1,623,650	-				-0.8
1,623,651	+				+0.2
1,623,651	+				-1.9
1,623,651	+				-1.6
1,623,651	+				-0.5
1,623,651	+				-0.4
1,623,653	+				+2.5
1,623,653	+				-0.4
1,623,653	+				+1.1
1,623,656	-				-2.7
1,623,656	-				-1.2
1,623,660	-				+1.0
1,623,660	-				+0.7
1,623,722	+				-0.8
1,623,725	-				+2.4
1,623,796	-		MMJJ_RS08820	0.11	+1.2
1,623,837	-		MMJJ_RS08820	0.15	-0.8
1,623,837	-		MMJJ_RS08820	0.15	-0.5
1,623,838	+		MMJJ_RS08820	0.15	-1.9
1,623,907	-		MMJJ_RS08820	0.21	+0.5
1,623,907	-		MMJJ_RS08820	0.21	-0.5
1,623,907	-		MMJJ_RS08820	0.21	-1.3
1,623,907	-		MMJJ_RS08820	0.21	-2.4
1,623,975	+		MMJJ_RS08820	0.27	-0.9