Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08785

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,617,279	+		MMJJ_RS08775	0.47	-1.8
1,617,296	-		MMJJ_RS08775	0.49	-1.9
1,617,337	-		MMJJ_RS08775	0.53	-1.2
1,617,370	+		MMJJ_RS08775	0.57	-2.1
1,617,390	-		MMJJ_RS08775	0.59	-2.2
1,617,404	-		MMJJ_RS08775	0.60	+2.1
1,617,405	+		MMJJ_RS08775	0.61	-2.2
1,617,405	+		MMJJ_RS08775	0.61	-1.4
1,617,405	+		MMJJ_RS08775	0.61	+0.7
1,617,511	+		MMJJ_RS08775	0.72	-2.1
1,617,520	-		MMJJ_RS08775	0.73	-1.9
1,617,521	+		MMJJ_RS08775	0.73	+1.5
1,617,525	-		MMJJ_RS08775	0.74	-1.8
1,617,525	-		MMJJ_RS08775	0.74	-2.2
1,617,526	+		MMJJ_RS08775	0.74	+3.7
1,617,526	+		MMJJ_RS08775	0.74	-0.0
1,617,528	+		MMJJ_RS08775	0.74	-0.6
1,617,576	-		MMJJ_RS08775	0.79	+1.5
1,617,591	+		MMJJ_RS08775	0.81	+3.5
1,617,705	-				+2.0
1,617,705	-				-0.9
1,617,724	-				+0.6
1,617,724	-				-2.7
1,617,728	-				+0.2
1,617,729	+				-1.6
1,617,729	+				-2.8
1,617,729	+				-0.5
1,617,729	+				-0.1
1,617,729	+				+1.9
1,617,731	+				-0.4
1,617,735	+				-4.2
1,617,735	+				+3.7
1,617,744	-				+1.2
1,617,745	+				+0.2
1,617,793	-				-0.6
1,617,820	-		MMJJ_RS08780	0.11	+2.8
1,617,820	-		MMJJ_RS08780	0.11	+2.6
1,617,821	+		MMJJ_RS08780	0.11	+3.4
1,617,821	+		MMJJ_RS08780	0.11	-1.8
1,617,824	+		MMJJ_RS08780	0.12	-1.8
1,617,830	+		MMJJ_RS08780	0.13	+2.2
1,617,851	-		MMJJ_RS08780	0.17	-0.1
1,617,852	+		MMJJ_RS08780	0.18	+1.3
1,617,857	+		MMJJ_RS08780	0.19	-0.5
1,617,891	-		MMJJ_RS08780	0.26	+0.6
1,617,891	-		MMJJ_RS08780	0.26	-2.5
1,617,892	+		MMJJ_RS08780	0.26	+3.8
1,617,893	-		MMJJ_RS08780	0.26	+1.4
1,617,894	+		MMJJ_RS08780	0.27	-1.8
1,617,908	+		MMJJ_RS08780	0.30	-1.1
1,617,928	-		MMJJ_RS08780	0.34	-1.2
1,617,936	-		MMJJ_RS08780	0.35	-1.4
1,617,937	+		MMJJ_RS08780	0.36	-1.9
1,617,937	+		MMJJ_RS08780	0.36	+2.0
1,618,075	-		MMJJ_RS08780	0.65	-2.7
1,618,078	+		MMJJ_RS08780	0.66	-3.5
1,618,285	-				+0.0
1,618,290	+				+3.1
1,618,336	+		MMJJ_RS08785	0.16	+1.1
1,618,336	+		MMJJ_RS08785	0.16	-2.2
1,618,344	-		MMJJ_RS08785	0.18	-1.1
1,618,344	-		MMJJ_RS08785	0.18	-0.4
1,618,346	-		MMJJ_RS08785	0.18	+1.8
1,618,359	+		MMJJ_RS08785	0.21	-0.8
1,618,435	+		MMJJ_RS08785	0.34	-3.1
1,618,476	-		MMJJ_RS08785	0.42	-1.2
1,618,476	-		MMJJ_RS08785	0.42	-2.5
1,618,476	-		MMJJ_RS08785	0.42	-1.5
1,618,555	+		MMJJ_RS08785	0.56	-2.4
1,618,677	-		MMJJ_RS08785	0.78	+4.1
1,618,707	-		MMJJ_RS08785	0.83	+1.2
1,618,707	-		MMJJ_RS08785	0.83	+3.0
1,618,713	-		MMJJ_RS08785	0.84	+1.0
1,618,714	+		MMJJ_RS08785	0.85	+1.6
1,618,714	+		MMJJ_RS08785	0.85	+0.4
1,618,715	-		MMJJ_RS08785	0.85	+2.5
1,618,715	-		MMJJ_RS08785	0.85	+2.0
1,618,715	-		MMJJ_RS08785	0.85	+0.0
1,618,715	-		MMJJ_RS08785	0.85	-1.8
1,618,716	+		MMJJ_RS08785	0.85	+3.6
1,618,716	+		MMJJ_RS08785	0.85	-2.2
1,618,719	-		MMJJ_RS08785	0.85	+0.1
1,618,719	-		MMJJ_RS08785	0.85	+2.1
1,618,731	-		MMJJ_RS08785	0.88	+3.4
1,618,731	-		MMJJ_RS08785	0.88	+2.7
1,618,736	-		MMJJ_RS08785	0.88	-0.9
1,618,736	-		MMJJ_RS08785	0.88	+3.3
1,618,737	+		MMJJ_RS08785	0.89	+0.1
1,618,737	+		MMJJ_RS08785	0.89	+2.5
1,618,752	-				-2.1
1,618,752	-				+1.2
1,618,754	-				+0.5
1,618,754	-				-1.1
1,618,755	+				+2.3
1,618,755	+				+3.6
1,618,755	+				+2.6
1,618,789	-				+1.4
1,618,790	+				+1.2
1,618,790	+				-1.1
1,618,790	+				+2.9
1,618,827	-				+0.3
1,618,844	-				+2.2
1,618,844	-				+1.6
1,618,844	-				+0.1
1,618,844	-				-3.2
1,618,844	-				-3.2
1,618,844	-				-2.4
1,618,845	+				+0.2
1,618,848	-				-0.4
1,618,848	-				-2.4
1,618,848	-				+0.2
1,618,849	+				-2.0
1,618,849	+				+5.8
1,618,849	+				-3.0
1,618,849	+				-0.8
1,618,849	+				+4.0
1,618,849	+				-0.8
1,618,862	+				-2.4
1,618,866	-				+0.5
1,618,867	+				+0.2
1,618,882	-		MMJJ_RS08790	0.10	+1.7
1,618,895	+		MMJJ_RS08790	0.12	-1.1
1,618,900	-		MMJJ_RS08790	0.12	+4.6
1,618,901	+		MMJJ_RS08790	0.12	+2.8
1,618,901	+		MMJJ_RS08790	0.12	+1.6
1,618,930	-		MMJJ_RS08790	0.15	+2.5
1,618,930	-		MMJJ_RS08790	0.15	+0.0
1,618,930	-		MMJJ_RS08790	0.15	+2.4
1,618,931	+		MMJJ_RS08790	0.15	+2.7
1,618,931	+		MMJJ_RS08790	0.15	+2.1
1,618,931	+		MMJJ_RS08790	0.15	+0.4
1,618,931	+		MMJJ_RS08790	0.15	-0.8
1,618,989	-		MMJJ_RS08790	0.21	-1.3
1,618,992	-		MMJJ_RS08790	0.22	-0.8
1,618,993	+		MMJJ_RS08790	0.22	-1.3
1,618,993	+		MMJJ_RS08790	0.22	-2.7
1,618,993	+		MMJJ_RS08790	0.22	+2.8
1,618,994	-		MMJJ_RS08790	0.22	-0.3
1,619,001	-		MMJJ_RS08790	0.23	+1.6
1,619,002	+		MMJJ_RS08790	0.23	+0.3
1,619,002	+		MMJJ_RS08790	0.23	+1.9
1,619,021	-		MMJJ_RS08790	0.25	+0.2
1,619,031	-		MMJJ_RS08790	0.26	+2.0
1,619,084	-		MMJJ_RS08790	0.31	+0.2
1,619,089	+		MMJJ_RS08790	0.32	+2.6
1,619,090	-		MMJJ_RS08790	0.32	+1.0
1,619,091	+		MMJJ_RS08790	0.32	-2.1
1,619,168	+		MMJJ_RS08790	0.40	-1.4
1,619,198	-		MMJJ_RS08790	0.43	-1.6
1,619,209	-		MMJJ_RS08790	0.44	+0.6
1,619,210	+		MMJJ_RS08790	0.44	-2.0
1,619,224	-		MMJJ_RS08790	0.46	-1.0
1,619,224	-		MMJJ_RS08790	0.46	-0.8
1,619,224	-		MMJJ_RS08790	0.46	-2.4
1,619,225	+		MMJJ_RS08790	0.46	+1.9
1,619,261	-		MMJJ_RS08790	0.50	+2.2
1,619,261	-		MMJJ_RS08790	0.50	+1.6
1,619,262	+		MMJJ_RS08790	0.50	+3.1
1,619,270	+		MMJJ_RS08790	0.51	+0.2
1,619,274	-		MMJJ_RS08790	0.51	+2.6
1,619,274	-		MMJJ_RS08790	0.51	+2.0
1,619,274	-		MMJJ_RS08790	0.51	-1.0
1,619,275	+		MMJJ_RS08790	0.51	+0.1
1,619,275	+		MMJJ_RS08790	0.51	+3.4
1,619,275	+		MMJJ_RS08790	0.51	+0.6
1,619,287	-		MMJJ_RS08790	0.53	-3.4
1,619,287	-		MMJJ_RS08790	0.53	+0.8
1,619,288	+		MMJJ_RS08790	0.53	-0.1
1,619,300	-		MMJJ_RS08790	0.54	-0.4
1,619,300	-		MMJJ_RS08790	0.54	-1.7
1,619,301	+		MMJJ_RS08790	0.54	-2.5
1,619,301	+		MMJJ_RS08790	0.54	+1.4
1,619,316	-		MMJJ_RS08790	0.56	-2.2
1,619,317	+		MMJJ_RS08790	0.56	+1.5
1,619,319	-		MMJJ_RS08790	0.56	+0.2
1,619,322	+		MMJJ_RS08790	0.56	+1.1
1,619,336	-		MMJJ_RS08790	0.58	+1.0
1,619,340	-		MMJJ_RS08790	0.58	-3.6
1,619,340	-		MMJJ_RS08790	0.58	+0.8
1,619,341	+		MMJJ_RS08790	0.58	-2.6
1,619,363	+		MMJJ_RS08790	0.60	-0.4
1,619,375	-		MMJJ_RS08790	0.62	+1.2
1,619,376	+		MMJJ_RS08790	0.62	-2.9
1,619,407	-		MMJJ_RS08790	0.65	+2.0
1,619,495	+		MMJJ_RS08790	0.74	+1.9
1,619,541	+		MMJJ_RS08790	0.79	+0.9
1,619,558	+		MMJJ_RS08790	0.81	-3.5
1,619,558	+		MMJJ_RS08790	0.81	-0.8
1,619,576	-		MMJJ_RS08790	0.83	-2.2
1,619,584	-		MMJJ_RS08790	0.83	-0.6
1,619,585	+		MMJJ_RS08790	0.84	-2.4
1,619,649	-				-1.5
1,619,650	+				+1.8
1,619,661	-				+2.8
1,619,661	-				+1.7
1,619,662	+				-1.4
1,619,662	+				-3.0
1,619,662	+				+1.9
1,619,673	-				-2.4
1,619,700	-				-2.7
1,619,703	-				+2.3
1,619,703	-				-3.2
1,619,715	-				+3.0
1,619,715	-				+1.2
1,619,716	+				-2.8
1,619,729	+				+0.1
1,619,755	-				-1.9
1,619,772	+				-1.6
1,619,772	+				+1.7
1,619,773	-				+3.4
1,619,773	-				-2.7
1,619,773	-				-0.5
1,619,774	+				+2.3
1,619,774	+				+3.9
1,619,777	-				+0.2
1,619,777	-				+0.4
1,619,777	-				+2.1
1,619,777	-				-1.7
1,619,778	+				+3.6
1,619,778	+				-1.9
1,619,788	+				+4.8
1,619,797	-				-0.4
1,619,798	+				-2.8
1,619,798	+				+1.9