Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08715

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,603,279	-				+1.5
1,603,280	+				+1.9
1,603,280	+				+1.7
1,603,280	+				+1.6
1,603,301	+				+0.5
1,603,301	+				-0.6
1,603,305	-				-1.8
1,603,306	+				+4.0
1,603,312	-				+3.8
1,603,330	-				+2.7
1,603,345	-				-1.6
1,603,345	-				+4.9
1,603,363	-				+4.3
1,603,363	-				-1.1
1,603,364	+				+2.3
1,603,364	+				-1.8
1,603,366	-				+5.3
1,603,366	-				+2.2
1,603,367	+				-0.8
1,603,370	+				-0.8
1,603,370	+				-0.8
1,603,372	+				+6.6
1,603,392	+				+3.4
1,603,412	-				-0.8
1,603,499	-		MMJJ_RS08710	0.12	+1.2
1,603,500	+		MMJJ_RS08710	0.13	+5.3
1,603,500	+		MMJJ_RS08710	0.13	+4.8
1,603,500	+		MMJJ_RS08710	0.13	-1.6
1,603,504	-		MMJJ_RS08710	0.13	-2.2
1,603,504	-		MMJJ_RS08710	0.13	-0.0
1,603,504	-		MMJJ_RS08710	0.13	-1.1
1,603,505	+		MMJJ_RS08710	0.13	-2.4
1,603,509	+		MMJJ_RS08710	0.14	+5.5
1,603,548	+		MMJJ_RS08710	0.18	+2.1
1,603,551	+		MMJJ_RS08710	0.19	+5.4
1,603,555	+		MMJJ_RS08710	0.19	-4.2
1,603,662	-		MMJJ_RS08710	0.32	-2.6
1,603,663	+		MMJJ_RS08710	0.32	+1.6
1,603,665	-		MMJJ_RS08710	0.32	+2.1
1,603,681	+		MMJJ_RS08710	0.34	-1.2
1,603,681	+		MMJJ_RS08710	0.34	+1.0
1,603,681	+		MMJJ_RS08710	0.34	+1.2
1,603,681	+		MMJJ_RS08710	0.34	+5.0
1,603,682	-		MMJJ_RS08710	0.34	-0.8
1,603,683	+		MMJJ_RS08710	0.34	+2.7
1,603,683	+		MMJJ_RS08710	0.34	-2.4
1,603,684	-		MMJJ_RS08710	0.34	-1.4
1,603,684	-		MMJJ_RS08710	0.34	-1.9
1,603,688	+		MMJJ_RS08710	0.35	+1.5
1,603,688	+		MMJJ_RS08710	0.35	-1.1
1,603,728	+		MMJJ_RS08710	0.39	-2.1
1,603,766	-		MMJJ_RS08710	0.44	+0.2
1,603,766	-		MMJJ_RS08710	0.44	+4.4
1,603,770	+		MMJJ_RS08710	0.44	-0.8
1,603,884	-		MMJJ_RS08710	0.58	-1.9
1,603,899	+		MMJJ_RS08710	0.60	+2.3
1,603,961	-		MMJJ_RS08710	0.67	-0.2
1,603,985	-		MMJJ_RS08710	0.70	+3.9
1,604,000	+		MMJJ_RS08710	0.71	+6.1
1,604,004	+		MMJJ_RS08710	0.72	+1.9
1,604,070	-		MMJJ_RS08710	0.80	+3.0
1,604,142	-		MMJJ_RS08710	0.88	-2.8
1,604,196	-				-1.6
1,604,196	-				+0.4
1,604,197	+				-2.9
1,604,197	+				-1.1
1,604,198	-				-0.8
1,604,199	+				-0.8
1,604,199	+				-0.4
1,604,199	+				+3.2
1,604,216	+				-2.2
1,604,246	+				+2.1
1,604,247	-				-0.5
1,604,251	-				-2.4
1,604,251	-				+1.5
1,604,251	-				+1.0
1,604,251	-				+1.5
1,604,251	-				-1.9
1,604,252	+				+0.4
1,604,252	+				+4.1
1,604,254	-				+2.1
1,604,254	-				+0.2
1,604,255	+				-2.9
1,604,259	-				+3.3
1,604,363	-		MMJJ_RS08715	0.10	+1.9
1,604,372	-		MMJJ_RS08715	0.11	-1.9
1,604,373	+		MMJJ_RS08715	0.11	-1.4
1,604,433	+		MMJJ_RS08715	0.18	+3.8
1,604,532	-		MMJJ_RS08715	0.29	-2.5
1,604,595	-		MMJJ_RS08715	0.37	-0.8
1,604,597	-		MMJJ_RS08715	0.37	+0.4
1,604,598	+		MMJJ_RS08715	0.37	+0.5
1,604,598	+		MMJJ_RS08715	0.37	-0.6
1,604,636	+		MMJJ_RS08715	0.41	-2.6
1,604,710	-		MMJJ_RS08715	0.50	-1.6
1,604,710	-		MMJJ_RS08715	0.50	-1.6
1,604,712	-		MMJJ_RS08715	0.50	+1.7
1,604,722	-		MMJJ_RS08715	0.51	+0.6
1,604,725	+		MMJJ_RS08715	0.51	-1.4
1,604,752	+		MMJJ_RS08715	0.54	-2.2
1,604,757	+		MMJJ_RS08715	0.55	-1.1
1,604,951	-		MMJJ_RS08715	0.77	+3.1
1,604,952	+		MMJJ_RS08715	0.77	+1.5
1,604,952	+		MMJJ_RS08715	0.77	+1.2
1,604,955	-		MMJJ_RS08715	0.78	-2.8
1,604,955	-		MMJJ_RS08715	0.78	+1.6
1,604,957	-		MMJJ_RS08715	0.78	+4.4
1,604,957	-		MMJJ_RS08715	0.78	-0.4
1,604,957	-		MMJJ_RS08715	0.78	+2.8
1,604,958	+		MMJJ_RS08715	0.78	-2.4
1,604,958	+		MMJJ_RS08715	0.78	-1.0
1,605,034	+		MMJJ_RS08715	0.87	+0.1
1,605,038	+		MMJJ_RS08715	0.87	-3.2
1,605,064	-				-2.4
1,605,071	-				-3.8
1,605,071	-				-0.8
1,605,072	+				-2.5
1,605,073	-				-1.5
1,605,073	-				+0.1
1,605,073	-				-2.9
1,605,073	-				+0.6
1,605,073	-				+0.1
1,605,073	-				-1.4
1,605,073	-				-0.0
1,605,073	-				+2.2
1,605,074	+				+0.1
1,605,074	+				+3.5
1,605,074	+				+1.1
1,605,074	+				-0.4
1,605,074	+				-2.8
1,605,074	+				+3.4
1,605,074	+				-0.2
1,605,074	+				-1.1
1,605,074	+				+2.7
1,605,074	+				+1.8
1,605,074	+				+4.3
1,605,074	+				+0.8
1,605,074	+				+3.2
1,605,074	+				-1.9
1,605,075	-				-1.9
1,605,075	-				-2.1
1,605,075	-				+3.9
1,605,076	+				+0.9
1,605,076	+				-2.4
1,605,101	-				-0.6
1,605,148	-				+4.7
1,605,153	-				-2.8
1,605,153	-				-2.8
1,605,154	+				-1.1
1,605,154	+				+3.7
1,605,193	-				+3.1
1,605,193	-				-1.4
1,605,203	-				-0.4
1,605,250	+				+3.9
1,605,282	+				+1.6
1,605,285	-				-1.1
1,605,304	-		MMJJ_RS08720	0.10	-2.8
1,605,304	-		MMJJ_RS08720	0.10	+1.0
1,605,304	-		MMJJ_RS08720	0.10	-1.1
1,605,304	-		MMJJ_RS08720	0.10	+2.2
1,605,305	+		MMJJ_RS08720	0.11	-1.0
1,605,305	+		MMJJ_RS08720	0.11	-0.1
1,605,305	+		MMJJ_RS08720	0.11	+3.6
1,605,381	-		MMJJ_RS08720	0.16	+1.7
1,605,382	+		MMJJ_RS08720	0.16	+5.8
1,605,512	-		MMJJ_RS08720	0.26	+6.0
1,605,512	-		MMJJ_RS08720	0.26	+0.2
1,605,513	+		MMJJ_RS08720	0.26	-1.4
1,605,582	-		MMJJ_RS08720	0.31	-1.1
1,605,582	-		MMJJ_RS08720	0.31	-1.7
1,605,647	-		MMJJ_RS08720	0.36	-1.4
1,605,647	-		MMJJ_RS08720	0.36	-0.6
1,605,701	-		MMJJ_RS08720	0.40	-1.6
1,605,702	+		MMJJ_RS08720	0.41	+3.8
1,605,702	+		MMJJ_RS08720	0.41	+0.2
1,605,702	+		MMJJ_RS08720	0.41	-1.9
1,605,748	-		MMJJ_RS08720	0.44	-1.8
1,605,748	-		MMJJ_RS08720	0.44	-3.4
1,605,749	+		MMJJ_RS08720	0.44	-1.8
1,605,768	+		MMJJ_RS08720	0.46	-1.8
1,605,772	-		MMJJ_RS08720	0.46	-0.4
1,605,773	+		MMJJ_RS08720	0.46	-0.8
1,605,813	+		MMJJ_RS08720	0.49	-2.0
1,605,854	-		MMJJ_RS08720	0.52	-0.4
1,605,855	+		MMJJ_RS08720	0.52	-1.8
1,605,863	-		MMJJ_RS08720	0.53	-1.4
1,605,863	-		MMJJ_RS08720	0.53	+2.3
1,605,868	-		MMJJ_RS08720	0.53	-2.5
1,605,869	+		MMJJ_RS08720	0.53	-0.9
1,605,953	-		MMJJ_RS08720	0.59	+4.8
1,605,979	-		MMJJ_RS08720	0.61	-0.8
1,605,981	-		MMJJ_RS08720	0.62	-2.6
1,605,982	+		MMJJ_RS08720	0.62	-1.6
1,605,982	+		MMJJ_RS08720	0.62	-0.9
1,605,982	+		MMJJ_RS08720	0.62	-0.2
1,605,982	+		MMJJ_RS08720	0.62	-1.6
1,606,002	-		MMJJ_RS08720	0.63	+3.0
1,606,017	-		MMJJ_RS08720	0.64	+3.6
1,606,018	+		MMJJ_RS08720	0.64	-1.4
1,606,023	+		MMJJ_RS08720	0.65	+3.4
1,606,037	-		MMJJ_RS08720	0.66	-2.6
1,606,038	+		MMJJ_RS08720	0.66	-2.2
1,606,066	-		MMJJ_RS08720	0.68	-2.2
1,606,067	+		MMJJ_RS08720	0.68	-2.8
1,606,070	+		MMJJ_RS08720	0.68	+1.9
1,606,079	-		MMJJ_RS08720	0.69	-2.8
1,606,079	-		MMJJ_RS08720	0.69	-2.6
1,606,080	+		MMJJ_RS08720	0.69	-2.7
1,606,086	-		MMJJ_RS08720	0.70	+5.6