Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08655

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,591,683	+		MMJJ_RS08645	0.45	+1.2
1,591,953	-				-1.7
1,591,997	-				-0.5
1,591,997	-				-1.6
1,591,997	-				-2.2
1,591,997	-				+2.3
1,591,998	+				-0.4
1,591,998	+				-0.8
1,591,998	+				+1.5
1,591,998	+				-0.8
1,592,003	+				-0.1
1,592,041	-				-0.4
1,592,041	-				+2.6
1,592,041	-				-0.7
1,592,043	-				-1.5
1,592,043	-				-1.4
1,592,044	+				-0.6
1,592,130	-		MMJJ_RS08650	0.23	-2.1
1,592,131	+		MMJJ_RS08650	0.23	-0.7
1,592,131	+		MMJJ_RS08650	0.23	+0.2
1,592,131	+		MMJJ_RS08650	0.23	-2.1
1,592,141	-		MMJJ_RS08650	0.25	-0.8
1,592,141	-		MMJJ_RS08650	0.25	-0.1
1,592,142	+		MMJJ_RS08650	0.25	+0.5
1,592,142	+		MMJJ_RS08650	0.25	+0.6
1,592,142	+		MMJJ_RS08650	0.25	-1.9
1,592,143	-		MMJJ_RS08650	0.25	-3.3
1,592,143	-		MMJJ_RS08650	0.25	+0.0
1,592,143	-		MMJJ_RS08650	0.25	+0.1
1,592,144	+		MMJJ_RS08650	0.25	-2.8
1,592,161	+		MMJJ_RS08650	0.28	+0.6
1,592,211	-		MMJJ_RS08650	0.36	+0.4
1,592,257	-		MMJJ_RS08650	0.43	-3.4
1,592,263	+		MMJJ_RS08650	0.44	-0.4
1,592,263	+		MMJJ_RS08650	0.44	-1.7
1,592,274	-		MMJJ_RS08650	0.45	-2.5
1,592,275	+		MMJJ_RS08650	0.46	+0.0
1,592,275	+		MMJJ_RS08650	0.46	-0.7
1,592,302	-		MMJJ_RS08650	0.50	-0.8
1,592,303	+		MMJJ_RS08650	0.50	-1.8
1,592,317	-		MMJJ_RS08650	0.52	-2.2
1,592,322	-		MMJJ_RS08650	0.53	-1.4
1,592,356	+		MMJJ_RS08650	0.58	-0.2
1,592,375	+		MMJJ_RS08650	0.61	-0.1
1,592,401	-		MMJJ_RS08650	0.65	-1.8
1,592,401	-		MMJJ_RS08650	0.65	-1.1
1,592,406	-		MMJJ_RS08650	0.66	-1.4
1,592,407	+		MMJJ_RS08650	0.66	-1.4
1,592,407	+		MMJJ_RS08650	0.66	-2.8
1,592,407	+		MMJJ_RS08650	0.66	+1.8
1,592,409	-		MMJJ_RS08650	0.66	-2.2
1,592,410	+		MMJJ_RS08650	0.67	+2.5
1,592,412	-		MMJJ_RS08650	0.67	+0.4
1,592,454	-		MMJJ_RS08650	0.73	-1.9
1,592,454	-		MMJJ_RS08650	0.73	+2.0
1,592,455	+		MMJJ_RS08650	0.73	+1.6
1,592,455	+		MMJJ_RS08650	0.73	-2.5
1,592,491	+		MMJJ_RS08650	0.79	-1.1
1,592,491	+		MMJJ_RS08650	0.79	+1.0
1,592,495	-		MMJJ_RS08650	0.80	+3.0
1,592,496	+		MMJJ_RS08650	0.80	+1.0
1,592,545	-		MMJJ_RS08650	0.87	-0.8
1,592,545	-		MMJJ_RS08650	0.87	+1.9
1,592,546	+		MMJJ_RS08650	0.88	+0.3
1,592,546	+		MMJJ_RS08650	0.88	-1.4
1,592,579	+				-0.9
1,592,595	-				+0.3
1,592,595	-				+0.5
1,592,613	-				+0.6
1,592,685	+		MMJJ_RS08655	0.11	-1.5
1,592,685	+		MMJJ_RS08655	0.11	+0.7
1,592,685	+		MMJJ_RS08655	0.11	+1.5
1,592,708	-		MMJJ_RS08655	0.15	+2.9
1,592,759	-		MMJJ_RS08655	0.24	-2.2
1,592,760	+		MMJJ_RS08655	0.24	+0.6
1,592,770	+		MMJJ_RS08655	0.26	-1.2
1,592,770	+		MMJJ_RS08655	0.26	+2.4
1,592,775	-		MMJJ_RS08655	0.27	+2.8
1,592,780	-		MMJJ_RS08655	0.27	+2.5
1,592,781	+		MMJJ_RS08655	0.28	+1.9
1,592,781	+		MMJJ_RS08655	0.28	-2.6
1,592,783	-		MMJJ_RS08655	0.28	+1.5
1,592,784	+		MMJJ_RS08655	0.28	-2.4
1,592,796	+		MMJJ_RS08655	0.30	+2.5
1,592,820	+		MMJJ_RS08655	0.34	+1.9
1,592,852	-		MMJJ_RS08655	0.40	+1.3
1,592,880	-		MMJJ_RS08655	0.45	+2.7
1,592,928	-		MMJJ_RS08655	0.53	+1.3
1,592,929	+		MMJJ_RS08655	0.53	-1.8
1,592,929	+		MMJJ_RS08655	0.53	+0.4
1,592,949	-		MMJJ_RS08655	0.57	+3.3
1,592,949	-		MMJJ_RS08655	0.57	-0.1
1,592,949	-		MMJJ_RS08655	0.57	+1.3
1,592,949	-		MMJJ_RS08655	0.57	+0.5
1,592,950	+		MMJJ_RS08655	0.57	+3.5
1,592,950	+		MMJJ_RS08655	0.57	+0.7
1,592,954	+		MMJJ_RS08655	0.58	-0.4
1,592,970	+		MMJJ_RS08655	0.60	+0.7
1,592,975	-		MMJJ_RS08655	0.61	+3.2
1,592,988	+		MMJJ_RS08655	0.64	+1.2
1,592,992	-		MMJJ_RS08655	0.64	+5.0
1,592,992	-		MMJJ_RS08655	0.64	+1.7
1,592,992	-		MMJJ_RS08655	0.64	+1.5
1,592,993	+		MMJJ_RS08655	0.64	+3.5
1,593,007	+		MMJJ_RS08655	0.67	+3.7
1,593,007	+		MMJJ_RS08655	0.67	-0.6
1,593,013	-		MMJJ_RS08655	0.68	+1.2
1,593,013	-		MMJJ_RS08655	0.68	-2.7
1,593,013	-		MMJJ_RS08655	0.68	+2.0
1,593,014	+		MMJJ_RS08655	0.68	-1.1
1,593,014	+		MMJJ_RS08655	0.68	-1.9
1,593,014	+		MMJJ_RS08655	0.68	-2.6
1,593,022	-		MMJJ_RS08655	0.69	-3.3
1,593,022	-		MMJJ_RS08655	0.69	+3.6
1,593,089	-		MMJJ_RS08655	0.81	+3.0
1,593,115	+		MMJJ_RS08655	0.86	+1.4
1,593,129	-		MMJJ_RS08655	0.88	+2.2
1,593,153	-				-1.1
1,593,155	-				+0.6
1,593,155	-				+3.4
1,593,174	-				+0.7
1,593,174	-				+1.2
1,593,174	-				-2.2
1,593,175	+				+0.3
1,593,176	-				-0.6
1,593,176	-				-2.6
1,593,201	+				+0.8
1,593,201	+				-2.0
1,593,201	+				+1.2
1,593,210	+				-1.8
1,593,210	+				-1.6
1,593,221	-				-0.1
1,593,221	-				-1.1
1,593,252	-				-1.3
1,593,269	-				-0.1
1,593,269	-				-0.3
1,593,270	+				-2.3
1,593,270	+				+2.2
1,593,290	-				+1.6
1,593,291	+				-2.2
1,593,291	+				-1.9
1,593,291	+				-3.7
1,593,313	+				-1.4
1,593,317	+				-1.8
1,593,594	-		MMJJ_RS08660	0.20	-0.6
1,593,619	-				+1.2
1,593,785	-		MMJJ_RS08660	0.36	+0.6
1,593,970	+		MMJJ_RS08660	0.52	-0.9
1,593,991	-		MMJJ_RS08660	0.54	-1.1
1,593,992	+		MMJJ_RS08660	0.54	-0.1
1,594,061	+		MMJJ_RS08660	0.60	-0.8
1,594,099	-		MMJJ_RS08660	0.63	-0.4