Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08625

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,587,886	-		MMJJ_RS08620	0.20	+1.2
1,587,952	-		MMJJ_RS08620	0.26	-0.8
1,588,008	+		MMJJ_RS08620	0.31	-0.4
1,588,326	+		MMJJ_RS08620	0.60	+1.3
1,588,402	-				+0.2
1,588,408	-		MMJJ_RS08620	0.67	-3.0
1,588,445	+		MMJJ_RS08620	0.71	+1.2
1,588,475	-		MMJJ_RS08620	0.73	-0.8
1,588,476	+		MMJJ_RS08620	0.74	-1.8
1,588,528	-		MMJJ_RS08620	0.78	-3.0
1,588,540	-		MMJJ_RS08620	0.79	+0.6
1,588,653	+				+1.2
1,588,681	+				+0.2
1,588,681	+				-0.8
1,588,688	+				-0.8
1,588,688	+				+0.2
1,588,696	-				+0.2
1,588,697	+				+0.2
1,588,697	+				-1.6
1,588,697	+				-1.9
1,588,697	+				+2.0
1,588,697	+				+1.2
1,588,705	-				-1.6
1,588,705	-				-1.1
1,588,706	+				-1.6
1,588,706	+				-0.4
1,588,767	-				-1.7
1,588,838	-				-2.6
1,588,839	+				-1.6
1,588,839	+				-1.1
1,588,843	+				-2.1
1,588,857	-				-1.8
1,588,874	+				-2.1
1,588,916	-		MMJJ_RS08625	0.14	+1.2
1,588,986	-		MMJJ_RS08625	0.22	-2.6
1,588,986	-		MMJJ_RS08625	0.22	-1.9
1,588,987	+		MMJJ_RS08625	0.22	-1.4
1,588,990	-		MMJJ_RS08625	0.22	-0.4
1,588,990	-		MMJJ_RS08625	0.22	+0.2
1,588,994	+		MMJJ_RS08625	0.23	-0.4
1,588,995	-		MMJJ_RS08625	0.23	-1.6
1,588,996	+		MMJJ_RS08625	0.23	+1.2
1,589,001	-		MMJJ_RS08625	0.23	-3.2
1,589,040	-		MMJJ_RS08625	0.27	-2.3
1,589,060	-		MMJJ_RS08625	0.29	+1.2
1,589,229	+		MMJJ_RS08625	0.47	+0.2
1,589,255	-		MMJJ_RS08625	0.50	+1.2
1,589,306	-		MMJJ_RS08625	0.55	-1.6
1,589,346	-		MMJJ_RS08625	0.60	-1.8
1,589,346	-		MMJJ_RS08625	0.60	-0.8
1,589,346	-		MMJJ_RS08625	0.60	-0.1
1,589,346	-		MMJJ_RS08625	0.60	-0.8
1,589,348	-		MMJJ_RS08625	0.60	-1.6
1,589,364	-		MMJJ_RS08625	0.61	-1.5
1,589,365	+		MMJJ_RS08625	0.62	-1.4
1,589,412	-		MMJJ_RS08625	0.66	-0.8
1,589,412	-		MMJJ_RS08625	0.66	-1.4
1,589,413	+		MMJJ_RS08625	0.67	-0.4
1,589,413	+				+0.2
1,589,432	-		MMJJ_RS08625	0.69	-2.2
1,589,437	-		MMJJ_RS08625	0.69	-0.8
1,589,474	+		MMJJ_RS08625	0.73	-0.8
1,589,673	-				-1.1
1,589,774	+		MMJJ_RS08630	0.11	+1.7
1,589,887	-		MMJJ_RS08630	0.53	+0.3
1,589,888	+		MMJJ_RS08630	0.53	-0.9
1,589,888	+		MMJJ_RS08630	0.53	-3.1
1,589,888	+		MMJJ_RS08630	0.53	+1.8
1,589,888	+		MMJJ_RS08630	0.53	-0.3
1,589,888	+		MMJJ_RS08630	0.53	-0.4
1,589,909	-		MMJJ_RS08630	0.61	-1.9
1,589,943	-		MMJJ_RS08630	0.74	-0.1
1,589,943	-		MMJJ_RS08630	0.74	-0.6
1,589,943	-		MMJJ_RS08630	0.74	+0.7
1,589,943	-		MMJJ_RS08630	0.74	+2.2
1,589,944	+		MMJJ_RS08630	0.74	+3.1
1,589,944	+		MMJJ_RS08630	0.74	+1.1
1,589,944	+		MMJJ_RS08630	0.74	+1.0
1,589,965	-		MMJJ_RS08630	0.82	+3.6
1,589,965	-		MMJJ_RS08630	0.82	+1.2
1,589,966	+		MMJJ_RS08630	0.82	+0.6
1,589,994	-				+4.6
1,589,994	-				+0.2
1,589,994	-				-0.6
1,589,994	-				-0.0
1,589,995	+				+3.2
1,589,998	-				+0.4
1,589,998	-				+3.2
1,589,998	-				-0.5
1,589,998	-				-0.4
1,589,999	+				+0.2
1,590,001	-				+0.8
1,590,011	-				-0.4
1,590,012	+				-1.4
1,590,012	+				+2.3
1,590,012	+				-0.9
1,590,140	-		MMJJ_RS08635	0.40	+0.7
1,590,140	-		MMJJ_RS08635	0.40	-0.5
1,590,140	-		MMJJ_RS08635	0.40	-2.6
1,590,141	+		MMJJ_RS08635	0.41	-1.3
1,590,141	+		MMJJ_RS08635	0.41	-1.5
1,590,141	+		MMJJ_RS08635	0.41	+1.1
1,590,141	+		MMJJ_RS08635	0.41	-0.1
1,590,141	+		MMJJ_RS08635	0.41	-2.3
1,590,145	+		MMJJ_RS08635	0.42	+0.5
1,590,170	-		MMJJ_RS08635	0.50	+0.3
1,590,170	-		MMJJ_RS08635	0.50	+2.5
1,590,171	+		MMJJ_RS08635	0.50	-0.4
1,590,171	+		MMJJ_RS08635	0.50	+3.0
1,590,171	+		MMJJ_RS08635	0.50	-1.6
1,590,232	-		MMJJ_RS08635	0.70	-1.2
1,590,233	+		MMJJ_RS08635	0.70	+1.6
1,590,233	+		MMJJ_RS08635	0.70	-0.6
1,590,234	-		MMJJ_RS08635	0.71	-3.9
1,590,235	+		MMJJ_RS08635	0.71	+0.5
1,590,235	+		MMJJ_RS08635	0.71	+0.4
1,590,244	-		MMJJ_RS08635	0.74	-2.4
1,590,253	-		MMJJ_RS08635	0.77	+2.6
1,590,253	-		MMJJ_RS08635	0.77	-0.3
1,590,253	-		MMJJ_RS08635	0.77	+1.2
1,590,258	+		MMJJ_RS08635	0.78	+0.1
1,590,277	+		MMJJ_RS08635	0.84	-2.2
1,590,277	+		MMJJ_RS08635	0.84	-0.4
1,590,281	+		MMJJ_RS08635	0.86	+0.2
1,590,281	+		MMJJ_RS08635	0.86	-0.4