Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08575

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,578,830	-		MMJJ_RS08570	0.11	+0.2
1,578,831	+		MMJJ_RS08570	0.11	-1.2
1,578,857	-		MMJJ_RS08570	0.14	+0.7
1,578,860	-		MMJJ_RS08570	0.14	+1.1
1,578,861	+		MMJJ_RS08570	0.14	+1.0
1,578,914	-		MMJJ_RS08570	0.20	+2.6
1,578,915	+		MMJJ_RS08570	0.20	+0.8
1,578,976	-		MMJJ_RS08570	0.26	-3.2
1,578,976	-		MMJJ_RS08570	0.26	+2.6
1,579,182	+		MMJJ_RS08570	0.48	-1.4
1,579,310	+		MMJJ_RS08570	0.62	+0.3
1,579,385	+		MMJJ_RS08570	0.70	-0.5
1,579,428	-		MMJJ_RS08570	0.74	-0.4
1,579,429	+		MMJJ_RS08570	0.74	+0.1
1,579,433	-		MMJJ_RS08570	0.75	+0.9
1,579,433	-		MMJJ_RS08570	0.75	-3.0
1,579,450	-		MMJJ_RS08570	0.76	-2.6
1,579,451	+		MMJJ_RS08570	0.77	+3.3
1,579,451	+		MMJJ_RS08570	0.77	-0.8
1,579,451	+		MMJJ_RS08570	0.77	-0.5
1,579,526	-		MMJJ_RS08570	0.84	-4.1
1,579,527	+		MMJJ_RS08570	0.85	+1.8
1,579,527	+		MMJJ_RS08570	0.85	-0.2
1,579,553	-		MMJJ_RS08570	0.87	+2.3
1,579,553	-		MMJJ_RS08570	0.87	-2.4
1,579,553	-		MMJJ_RS08570	0.87	+1.8
1,579,554	+		MMJJ_RS08570	0.87	+0.4
1,579,554	+		MMJJ_RS08570	0.87	+0.7
1,579,557	-		MMJJ_RS08570	0.88	+4.2
1,579,557	-		MMJJ_RS08570	0.88	+0.5
1,579,557	-		MMJJ_RS08570	0.88	+2.7
1,579,557	-		MMJJ_RS08570	0.88	-0.2
1,579,558	+		MMJJ_RS08570	0.88	+1.9
1,579,558	+		MMJJ_RS08570	0.88	+1.2
1,579,558	+		MMJJ_RS08570	0.88	+2.1
1,579,558	+		MMJJ_RS08570	0.88	+0.6
1,579,624	-				+3.1
1,579,624	-				+0.8
1,579,624	-				-1.1
1,579,624	-				-1.8
1,579,625	+				+1.9
1,579,625	+				+0.9
1,579,684	+				-0.6
1,579,685	-				+3.0
1,579,685	-				+1.2
1,579,686	+				-0.5
1,579,686	+				+2.1
1,579,686	+				+0.9
1,579,686	+				-1.6
1,579,686	+				+1.8
1,579,686	+				+1.8
1,579,686	+				+2.4
1,579,689	-				+1.9
1,579,702	+				-2.5
1,579,702	+				+0.5
1,579,732	-				+2.2
1,579,733	+				-0.8
1,579,733	+				+2.1
1,579,738	-				-1.5
1,579,740	-				-2.7
1,579,740	-				+1.5
1,579,741	+				+0.2
1,579,741	+				-1.4
1,579,743	-				+0.0
1,579,743	-				+0.6
1,579,743	-				-3.9
1,579,748	+				+1.1
1,579,748	+				+0.5
1,579,759	+				+2.5
1,579,767	+				-1.6
1,579,767	+				+3.3
1,579,769	-				-2.2
1,579,772	+				+0.7
1,579,826	-				-2.6
1,579,826	-				+1.2
1,579,826	-				-2.1
1,579,826	-				-2.2
1,579,827	+				-2.6
1,579,827	+				-2.0
1,579,909	+		MMJJ_RS08575	0.32	-1.8
1,579,929	-		MMJJ_RS08575	0.39	+1.2
1,579,930	+		MMJJ_RS08575	0.39	-1.9
1,579,977	-		MMJJ_RS08575	0.55	-2.2
1,580,026	-		MMJJ_RS08575	0.72	-1.6
1,580,026	-		MMJJ_RS08575	0.72	-1.6
1,580,065	+		MMJJ_RS08575	0.85	-1.6
1,580,115	-				+2.1
1,580,180	+		MMJJ_RS08580	0.13	+0.3
1,580,224	-		MMJJ_RS08580	0.22	+2.9
1,580,224	-		MMJJ_RS08580	0.22	-0.6
1,580,227	+		MMJJ_RS08580	0.23	-3.1
1,580,230	+		MMJJ_RS08580	0.23	+0.8
1,580,270	+		MMJJ_RS08580	0.31	-0.4
1,580,335	+		MMJJ_RS08580	0.44	+3.6
1,580,354	+		MMJJ_RS08580	0.48	+1.7
1,580,383	-		MMJJ_RS08580	0.54	-0.8
1,580,384	+		MMJJ_RS08580	0.54	+1.4
1,580,507	+		MMJJ_RS08580	0.79	-1.4
1,580,657	+				+0.5
1,580,662	+				-0.4
1,580,676	+				-2.2
1,580,676	+				+0.5
1,580,692	+				-1.4
1,580,697	-				-0.5
1,580,697	-				+1.2
1,580,698	+				-1.5
1,580,698	+				+0.9
1,580,706	+				-1.0
1,580,787	-				-1.7
1,580,804	-		MMJJ_RS08585	0.11	-1.1
1,580,805	+		MMJJ_RS08585	0.11	-3.5
1,580,805	+		MMJJ_RS08585	0.11	-1.1
1,580,806	-		MMJJ_RS08585	0.11	-0.5
1,580,806	-		MMJJ_RS08585	0.11	-0.4
1,580,807	+		MMJJ_RS08585	0.11	-2.4
1,580,880	-		MMJJ_RS08585	0.18	+0.1
1,580,936	+		MMJJ_RS08585	0.23	-2.9
1,580,947	-		MMJJ_RS08585	0.24	+2.7
1,580,947	-		MMJJ_RS08585	0.24	-2.6
1,581,002	-				+1.2
1,581,003	+		MMJJ_RS08585	0.30	-0.9