Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08555

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,573,941	-		MMJJ_RS08550	0.29	+2.7
1,573,941	-		MMJJ_RS08550	0.29	+0.6
1,573,942	+		MMJJ_RS08550	0.29	+1.7
1,573,944	+		MMJJ_RS08550	0.29	-2.8
1,573,944	+		MMJJ_RS08550	0.29	-1.2
1,573,960	-		MMJJ_RS08550	0.31	+3.9
1,573,984	+		MMJJ_RS08550	0.32	+0.5
1,573,984	+		MMJJ_RS08550	0.32	+0.6
1,574,030	+		MMJJ_RS08550	0.36	+2.5
1,574,049	+		MMJJ_RS08550	0.37	-0.4
1,574,061	+		MMJJ_RS08550	0.38	-2.0
1,574,061	+		MMJJ_RS08550	0.38	-1.4
1,574,123	-		MMJJ_RS08550	0.43	-1.4
1,574,123	-		MMJJ_RS08550	0.43	-3.4
1,574,124	+		MMJJ_RS08550	0.43	-0.4
1,574,124	+		MMJJ_RS08550	0.43	+0.5
1,574,158	+		MMJJ_RS08550	0.46	-3.0
1,574,162	-		MMJJ_RS08550	0.46	+2.1
1,574,211	-		MMJJ_RS08550	0.50	-0.9
1,574,226	-		MMJJ_RS08550	0.51	-0.1
1,574,226	-		MMJJ_RS08550	0.51	-0.4
1,574,227	+		MMJJ_RS08550	0.51	+0.9
1,574,234	-		MMJJ_RS08550	0.51	-0.6
1,574,236	-		MMJJ_RS08550	0.52	-2.2
1,574,240	-		MMJJ_RS08550	0.52	+0.4
1,574,240	-		MMJJ_RS08550	0.52	+2.4
1,574,240	-		MMJJ_RS08550	0.52	+2.1
1,574,241	+		MMJJ_RS08550	0.52	+2.9
1,574,241	+		MMJJ_RS08550	0.52	-1.5
1,574,241	+		MMJJ_RS08550	0.52	-1.9
1,574,241	+		MMJJ_RS08550	0.52	-2.1
1,574,254	+		MMJJ_RS08550	0.53	-0.0
1,574,312	+		MMJJ_RS08550	0.57	-3.6
1,574,318	+		MMJJ_RS08550	0.58	+6.3
1,574,318	+		MMJJ_RS08550	0.58	+1.4
1,574,341	+		MMJJ_RS08550	0.60	-0.2
1,574,361	-		MMJJ_RS08550	0.61	+3.2
1,574,404	-		MMJJ_RS08550	0.64	+2.1
1,574,468	+		MMJJ_RS08550	0.69	-1.6
1,574,481	+		MMJJ_RS08550	0.70	+0.2
1,574,483	-		MMJJ_RS08550	0.70	-0.4
1,574,483	-		MMJJ_RS08550	0.70	+3.9
1,574,484	+		MMJJ_RS08550	0.70	-2.6
1,574,484	+		MMJJ_RS08550	0.70	+0.4
1,574,485	-		MMJJ_RS08550	0.71	+2.2
1,574,485	-		MMJJ_RS08550	0.71	-0.6
1,574,486	+		MMJJ_RS08550	0.71	-2.2
1,574,518	-		MMJJ_RS08550	0.73	+1.1
1,574,519	+		MMJJ_RS08550	0.73	-0.4
1,574,529	-		MMJJ_RS08550	0.74	-0.0
1,574,571	-		MMJJ_RS08550	0.77	+2.0
1,574,571	-		MMJJ_RS08550	0.77	-0.2
1,574,572	+		MMJJ_RS08550	0.77	-2.4
1,574,572	+		MMJJ_RS08550	0.77	-0.4
1,574,655	-		MMJJ_RS08550	0.83	-2.4
1,574,660	-		MMJJ_RS08550	0.84	+5.0
1,574,660	-		MMJJ_RS08550	0.84	+2.9
1,574,660	-		MMJJ_RS08550	0.84	+0.2
1,574,661	+		MMJJ_RS08550	0.84	+0.2
1,574,693	+		MMJJ_RS08550	0.86	+1.6
1,574,693	+		MMJJ_RS08550	0.86	+2.1
1,574,719	-		MMJJ_RS08550	0.88	-0.7
1,574,719	-		MMJJ_RS08550	0.88	-1.1
1,574,719	-		MMJJ_RS08550	0.88	-3.6
1,574,720	+		MMJJ_RS08550	0.88	-1.9
1,574,720	+		MMJJ_RS08550	0.88	-2.8
1,574,825	-				-2.9
1,574,825	-				+0.5
1,574,826	+				+2.2
1,574,826	+				-0.1
1,574,826	+				-0.4
1,574,826	+				-0.7
1,574,826	+				-2.7
1,574,826	+				+0.2
1,574,887	+				-0.5
1,574,887	+				+2.6
1,574,891	-				-1.7
1,574,963	-				+1.2
1,574,964	+				-0.8
1,575,126	-		MMJJ_RS08555	0.18	-2.3
1,575,128	-		MMJJ_RS08555	0.18	-1.9
1,575,142	-		MMJJ_RS08555	0.19	+1.0
1,575,142	-		MMJJ_RS08555	0.19	-2.9
1,575,233	-		MMJJ_RS08555	0.27	-3.0
1,575,234	+		MMJJ_RS08555	0.27	-0.6
1,575,335	-		MMJJ_RS08555	0.36	+0.1
1,575,335	-		MMJJ_RS08555	0.36	-2.8
1,575,336	+		MMJJ_RS08555	0.36	-0.1
1,575,336	+		MMJJ_RS08555	0.36	-1.6
1,575,336	+		MMJJ_RS08555	0.36	-1.6
1,575,444	+		MMJJ_RS08555	0.45	+1.0
1,575,518	+		MMJJ_RS08555	0.51	-1.3
1,575,645	+		MMJJ_RS08555	0.62	-2.8
1,575,645	+		MMJJ_RS08555	0.62	-1.2
1,575,703	-		MMJJ_RS08555	0.67	-0.1
1,575,703	-		MMJJ_RS08555	0.67	-0.1
1,575,703	-		MMJJ_RS08555	0.67	-1.7
1,575,733	-		MMJJ_RS08555	0.69	-1.2
1,575,749	+		MMJJ_RS08555	0.71	-1.1
1,575,773	+		MMJJ_RS08555	0.73	-0.5
1,575,777	-		MMJJ_RS08555	0.73	-0.8
1,575,777	-		MMJJ_RS08555	0.73	-0.6
1,575,778	+		MMJJ_RS08555	0.73	-0.3
1,575,778	+		MMJJ_RS08555	0.73	+1.1
1,575,778	+		MMJJ_RS08555	0.73	-1.4
1,575,840	-		MMJJ_RS08555	0.78	-1.4
1,575,840	-		MMJJ_RS08555	0.78	+0.2
1,575,841	+		MMJJ_RS08555	0.78	-0.5
1,575,841	+		MMJJ_RS08555	0.78	+1.7
1,575,844	+		MMJJ_RS08555	0.79	+0.0
1,575,844	+		MMJJ_RS08555	0.79	-2.2
1,575,854	+		MMJJ_RS08555	0.80	-2.5
1,575,858	+		MMJJ_RS08555	0.80	-2.1
1,575,871	+		MMJJ_RS08555	0.81	+0.8
1,575,902	-		MMJJ_RS08555	0.84	+2.1
1,575,931	+		MMJJ_RS08555	0.86	-1.9
1,575,931	+		MMJJ_RS08555	0.86	-1.3
1,575,971	-		MMJJ_RS08555	0.89	-0.8
1,575,976	-		MMJJ_RS08555	0.90	-1.8
1,575,976	-		MMJJ_RS08555	0.90	-0.9
1,576,132	-				-1.3
1,576,133	+				+0.8
1,576,145	-				-1.9
1,576,149	+				-2.2
1,576,149	+				-1.6
1,576,161	+				-1.6
1,576,167	+				-2.4
1,576,180	-				+3.1
1,576,181	+				+0.2
1,576,420	-				+0.2
1,576,420	-		MMJJ_RS08560	0.48	+3.7
1,576,421	+		MMJJ_RS08560	0.48	+1.5
1,576,438	-		MMJJ_RS08560	0.51	+2.7
1,576,439	+		MMJJ_RS08560	0.51	-0.3
1,576,439	+		MMJJ_RS08560	0.51	+0.3
1,576,441	-		MMJJ_RS08560	0.52	+2.7
1,576,442	+		MMJJ_RS08560	0.52	-0.2
1,576,515	-		MMJJ_RS08560	0.65	+1.7
1,576,515	-		MMJJ_RS08560	0.65	-1.4
1,576,515	-		MMJJ_RS08560	0.65	+0.0
1,576,519	-		MMJJ_RS08560	0.66	-3.0
1,576,519	-		MMJJ_RS08560	0.66	-3.0
1,576,519	-		MMJJ_RS08560	0.66	-2.6
1,576,519	-		MMJJ_RS08560	0.66	-1.6
1,576,519	-		MMJJ_RS08560	0.66	+0.6
1,576,520	+		MMJJ_RS08560	0.66	+2.6
1,576,520	+		MMJJ_RS08560	0.66	+0.6
1,576,520	+		MMJJ_RS08560	0.66	+0.5
1,576,558	-		MMJJ_RS08560	0.73	+2.2
1,576,678	-				+3.4
1,576,697	-				-2.6
1,576,710	-				+0.5
1,576,763	-				+0.4
1,576,792	-				+2.8
1,576,792	-				-0.4
1,576,793	+				+1.5
1,576,929	+				-0.4
1,577,018	+		MMJJ_RS08565	0.14	-1.0