Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08535

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,569,935	-		MMJJ_RS08530	0.57	-1.1
1,569,963	+		MMJJ_RS08530	0.59	-1.9
1,570,045	+		MMJJ_RS08530	0.62	-2.1
1,570,237	+		MMJJ_RS08530	0.71	-2.3
1,570,361	+		MMJJ_RS08530	0.77	+1.1
1,570,392	+		MMJJ_RS08530	0.79	-0.4
1,570,392	+		MMJJ_RS08530	0.79	-2.1
1,570,473	+		MMJJ_RS08530	0.82	-3.1
1,570,611	+		MMJJ_RS08530	0.89	+1.9
1,570,637	-				-0.7
1,570,661	-				-1.6
1,570,661	-				-0.2
1,570,675	+				-2.0
1,570,675	+				-1.2
1,570,750	-				+1.4
1,570,750	-				+0.2
1,570,845	-				+0.8
1,570,849	-				-1.7
1,570,887	+				+0.9
1,570,908	-				-1.4
1,571,056	+		MMJJ_RS08535	0.20	-0.1
1,571,101	+		MMJJ_RS08535	0.25	-1.1
1,571,106	+		MMJJ_RS08535	0.26	+0.2
1,571,182	-		MMJJ_RS08535	0.35	-0.8
1,571,184	-		MMJJ_RS08535	0.36	+0.6
1,571,184	-		MMJJ_RS08535	0.36	-2.3
1,571,266	-		MMJJ_RS08535	0.46	-1.1
1,571,589	+		MMJJ_RS08535	0.86	-1.8
1,571,714	-				-1.4
1,571,718	+				-0.6
1,571,720	-				-0.9
1,571,722	-				-1.6
1,571,726	+				-2.4
1,571,726	+				-1.6
1,571,729	-				-1.6
1,571,730	+				-1.0
1,571,730	+				-1.9
1,571,732	-				-2.0
1,571,754	+				+2.3
1,571,858	+		MMJJ_RS08540	0.23	+0.6
1,571,887	-		MMJJ_RS08540	0.29	-2.4
1,571,887	-		MMJJ_RS08540	0.29	+6.6
1,571,888	+		MMJJ_RS08540	0.29	+1.7
1,571,888	+		MMJJ_RS08540	0.29	-2.8
1,571,891	-		MMJJ_RS08540	0.30	-1.6
1,571,891	-		MMJJ_RS08540	0.30	-0.1
1,571,891	-		MMJJ_RS08540	0.30	-1.2
1,571,892	+		MMJJ_RS08540	0.30	+1.0
1,571,892	+		MMJJ_RS08540	0.30	-1.2
1,571,892	+		MMJJ_RS08540	0.30	-1.4
1,571,904	-		MMJJ_RS08540	0.32	+1.5
1,571,904	-		MMJJ_RS08540	0.32	-0.0
1,571,905	+		MMJJ_RS08540	0.33	-2.5
1,571,905	+		MMJJ_RS08540	0.33	+2.6
1,571,905	+		MMJJ_RS08540	0.33	+0.5
1,571,905	+		MMJJ_RS08540	0.33	+1.2
1,571,906	-		MMJJ_RS08540	0.33	+2.3
1,571,907	+		MMJJ_RS08540	0.33	-1.4
1,571,907	+		MMJJ_RS08540	0.33	+1.6
1,571,910	+		MMJJ_RS08540	0.34	+2.6
1,571,917	-		MMJJ_RS08540	0.35	-1.8
1,571,918	+		MMJJ_RS08540	0.35	-2.0
1,571,918	+		MMJJ_RS08540	0.35	-2.8
1,571,918	+		MMJJ_RS08540	0.35	+0.5
1,571,924	-		MMJJ_RS08540	0.37	-0.7
1,571,941	+		MMJJ_RS08540	0.40	-1.7
1,571,941	+		MMJJ_RS08540	0.40	+0.9
1,571,941	+		MMJJ_RS08540	0.40	+1.4
1,571,944	+		MMJJ_RS08540	0.41	+1.3
1,571,949	+		MMJJ_RS08540	0.42	+2.4
1,571,969	-		MMJJ_RS08540	0.46	+3.0
1,571,969	-		MMJJ_RS08540	0.46	-0.1
1,571,969	-		MMJJ_RS08540	0.46	+1.7
1,571,969	-		MMJJ_RS08540	0.46	-3.7
1,571,969	-		MMJJ_RS08540	0.46	+0.3
1,571,970	+		MMJJ_RS08540	0.46	-0.1
1,571,972	+		MMJJ_RS08540	0.47	-2.0
1,571,982	+		MMJJ_RS08540	0.49	-0.9
1,571,982	+		MMJJ_RS08540	0.49	-2.8
1,572,007	-		MMJJ_RS08540	0.54	+0.2
1,572,008	+		MMJJ_RS08540	0.54	+1.7
1,572,029	-		MMJJ_RS08540	0.59	+0.9
1,572,029	-		MMJJ_RS08540	0.59	+0.9
1,572,047	-		MMJJ_RS08540	0.63	-2.0
1,572,048	+		MMJJ_RS08540	0.63	+4.1
1,572,048	+		MMJJ_RS08540	0.63	-3.8
1,572,108	-		MMJJ_RS08540	0.76	-1.1
1,572,146	-		MMJJ_RS08540	0.84	-1.4
1,572,147	+		MMJJ_RS08540	0.84	+0.2
1,572,149	-		MMJJ_RS08540	0.84	-1.6
1,572,149	-		MMJJ_RS08540	0.84	-3.4
1,572,149	-		MMJJ_RS08540	0.84	-1.1
1,572,149	-		MMJJ_RS08540	0.84	-0.6
1,572,149	-		MMJJ_RS08540	0.84	+0.9
1,572,149	-		MMJJ_RS08540	0.84	-2.3
1,572,149	-		MMJJ_RS08540	0.84	+0.6
1,572,149	-		MMJJ_RS08540	0.84	-2.0
1,572,149	-		MMJJ_RS08540	0.84	-1.9
1,572,149	-				+0.6
1,572,149	-		MMJJ_RS08540	0.84	-2.7
1,572,149	-		MMJJ_RS08540	0.84	-1.5
1,572,149	-		MMJJ_RS08540	0.84	+3.7
1,572,149	-		MMJJ_RS08540	0.84	+1.3
1,572,150	+		MMJJ_RS08540	0.84	-2.1
1,572,150	+		MMJJ_RS08540	0.84	-1.3
1,572,150	+		MMJJ_RS08540	0.84	+1.9
1,572,150	+		MMJJ_RS08540	0.84	+2.3
1,572,150	+		MMJJ_RS08540	0.84	+4.5
1,572,150	+		MMJJ_RS08540	0.84	-1.6
1,572,150	+		MMJJ_RS08540	0.84	-2.1
1,572,150	+		MMJJ_RS08540	0.84	-1.5
1,572,150	+		MMJJ_RS08540	0.84	-1.1
1,572,150	+		MMJJ_RS08540	0.84	+0.3
1,572,151	-		MMJJ_RS08540	0.85	+1.6
1,572,151	-		MMJJ_RS08540	0.85	-2.8
1,572,151	-		MMJJ_RS08540	0.85	-1.1
1,572,151	-		MMJJ_RS08540	0.85	+1.5
1,572,151	-		MMJJ_RS08540	0.85	-0.5
1,572,151	-		MMJJ_RS08540	0.85	-0.6
1,572,152	+		MMJJ_RS08540	0.85	-0.8
1,572,152	+		MMJJ_RS08540	0.85	-0.4
1,572,152	+		MMJJ_RS08540	0.85	+3.1
1,572,163	-		MMJJ_RS08540	0.87	+1.6
1,572,164	+		MMJJ_RS08540	0.87	-3.6
1,572,164	+		MMJJ_RS08540	0.87	+0.5
1,572,165	-		MMJJ_RS08540	0.88	-0.8
1,572,165	-		MMJJ_RS08540	0.88	-2.0
1,572,166	+		MMJJ_RS08540	0.88	-0.9
1,572,166	+		MMJJ_RS08540	0.88	+0.3
1,572,171	-		MMJJ_RS08540	0.89	-2.4
1,572,171	-		MMJJ_RS08540	0.89	-0.6
1,572,171	-		MMJJ_RS08540	0.89	-1.4
1,572,171	-		MMJJ_RS08540	0.89	+0.2
1,572,172	+		MMJJ_RS08540	0.89	-1.0
1,572,186	+				+0.3
1,572,202	+				-1.1
1,572,228	-				+3.4
1,572,229	+				-0.1
1,572,248	-				-1.6
1,572,248	-				+0.2
1,572,248	-				+6.3
1,572,248	-				+0.4
1,572,248	-				+0.6
1,572,249	+				-0.6
1,572,249	+				-1.0
1,572,249	+				+1.8
1,572,249	+				+1.8
1,572,249	+				-1.0
1,572,249	+				-2.1
1,572,249	+				+0.5
1,572,249	+				-1.6
1,572,250	-				+0.8
1,572,250	-				-0.4
1,572,255	-				+3.3
1,572,255	-				-1.4
1,572,256	+				+4.4
1,572,256	+				-1.4
1,572,256	+				-1.8
1,572,256	+				-1.1
1,572,259	-				-1.1
1,572,259	-				-3.4
1,572,259	-				+1.1
1,572,260	+				-1.9
1,572,260	+				-0.4
1,572,262	-				+0.7
1,572,268	+				+0.6
1,572,282	-				-1.1
1,572,283	+				+0.2
1,572,540	-		MMJJ_RS08545	0.29	+0.2