Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08335

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,535,764	+		MMJJ_RS08330	0.25	+0.2
1,535,783	-		MMJJ_RS08330	0.27	-1.1
1,535,872	+		MMJJ_RS08330	0.34	-2.1
1,535,899	+		MMJJ_RS08330	0.36	-1.8
1,536,153	+		MMJJ_RS08330	0.57	+1.2
1,536,156	+		MMJJ_RS08330	0.57	-0.8
1,536,411	+		MMJJ_RS08330	0.78	-0.4
1,536,805	-		MMJJ_RS08335	0.20	+0.2
1,536,806	+		MMJJ_RS08335	0.20	-2.6
1,536,826	-		MMJJ_RS08335	0.23	+0.2
1,536,977	-		MMJJ_RS08335	0.43	-1.6
1,537,427	-				+0.0
1,537,454	-				-1.4
1,537,499	-		MMJJ_RS08340	0.18	-0.8
1,537,517	+		MMJJ_RS08340	0.21	-1.6
1,537,518	-		MMJJ_RS08340	0.21	-0.8
1,537,518	-		MMJJ_RS08340	0.21	+1.2
1,537,520	-		MMJJ_RS08340	0.22	+1.7
1,537,520	-		MMJJ_RS08340	0.22	+0.2
1,537,520	-		MMJJ_RS08340	0.22	-1.4
1,537,521	+		MMJJ_RS08340	0.22	-1.8
1,537,556	-		MMJJ_RS08340	0.28	-1.4
1,537,556	-		MMJJ_RS08340	0.28	-1.4
1,537,591	+		MMJJ_RS08340	0.34	-1.8
1,537,796	+		MMJJ_RS08340	0.71	-0.4
1,537,817	+		MMJJ_RS08340	0.75	-1.4
1,537,820	-		MMJJ_RS08340	0.76	-0.6
1,537,846	+		MMJJ_RS08340	0.80	-1.8
1,537,850	+		MMJJ_RS08340	0.81	-0.8
1,537,860	+		MMJJ_RS08340	0.83	+0.2
1,537,895	+		MMJJ_RS08340	0.89	+1.2
1,537,943	-				+0.2
1,538,008	+				-2.5
1,538,074	+		MMJJ_RS08345	0.20	-0.6
1,538,085	-		MMJJ_RS08345	0.22	-2.2
1,538,108	+		MMJJ_RS08345	0.25	-0.8
1,538,126	+		MMJJ_RS08345	0.28	-2.3
1,538,126	+		MMJJ_RS08345	0.28	-2.2
1,538,126	+		MMJJ_RS08345	0.28	+0.3
1,538,128	-		MMJJ_RS08345	0.29	+1.9
1,538,132	-		MMJJ_RS08345	0.29	-0.6
1,538,133	+		MMJJ_RS08345	0.30	+0.2
1,538,152	-		MMJJ_RS08345	0.33	+2.7
1,538,152	-		MMJJ_RS08345	0.33	+0.5
1,538,155	-		MMJJ_RS08345	0.33	-0.4
1,538,212	+		MMJJ_RS08345	0.43	-0.4
1,538,227	-		MMJJ_RS08345	0.45	+2.1
1,538,227	-		MMJJ_RS08345	0.45	-1.8
1,538,227	-		MMJJ_RS08345	0.45	+0.3
1,538,228	+		MMJJ_RS08345	0.46	+1.2
1,538,228	+		MMJJ_RS08345	0.46	-2.7
1,538,228	+		MMJJ_RS08345	0.46	-3.0
1,538,228	+		MMJJ_RS08345	0.46	-1.4
1,538,228	+		MMJJ_RS08345	0.46	-0.8
1,538,228	+		MMJJ_RS08345	0.46	-1.8
1,538,228	+		MMJJ_RS08345	0.46	+1.2
1,538,243	+		MMJJ_RS08345	0.48	+2.4
1,538,256	-		MMJJ_RS08345	0.50	-0.7
1,538,256	-		MMJJ_RS08345	0.50	+0.1
1,538,273	+		MMJJ_RS08345	0.53	-2.2
1,538,295	-		MMJJ_RS08345	0.57	-1.6
1,538,298	+		MMJJ_RS08345	0.57	+0.8
1,538,298	+		MMJJ_RS08345	0.57	+1.2
1,538,298	+		MMJJ_RS08345	0.57	-2.1
1,538,298	+		MMJJ_RS08345	0.57	-1.9
1,538,316	-		MMJJ_RS08345	0.60	-0.4
1,538,317	+		MMJJ_RS08345	0.61	-2.5
1,538,345	-		MMJJ_RS08345	0.65	+0.2
1,538,346	+		MMJJ_RS08345	0.65	+1.6
1,538,359	+		MMJJ_RS08345	0.68	-1.3
1,538,361	-		MMJJ_RS08345	0.68	-0.5
1,538,362	+		MMJJ_RS08345	0.68	-2.7
1,538,362	+		MMJJ_RS08345	0.68	-1.4
1,538,362	+		MMJJ_RS08345	0.68	+5.4
1,538,362	+		MMJJ_RS08345	0.68	-1.8
1,538,362	+		MMJJ_RS08345	0.68	+0.5
1,538,362	+		MMJJ_RS08345	0.68	+2.0
1,538,367	-		MMJJ_RS08345	0.69	+2.4
1,538,385	-		MMJJ_RS08345	0.72	-2.0
1,538,385	-		MMJJ_RS08345	0.72	-2.9
1,538,385	-		MMJJ_RS08345	0.72	+1.2
1,538,386	+		MMJJ_RS08345	0.72	-0.4
1,538,391	-		MMJJ_RS08345	0.73	-2.0