Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08325

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,533,631	-		MMJJ_RS08315	0.40	-1.6
1,533,632	+		MMJJ_RS08315	0.40	+4.6
1,533,678	-		MMJJ_RS08315	0.49	+1.1
1,533,681	+		MMJJ_RS08315	0.49	+3.0
1,533,701	+		MMJJ_RS08315	0.53	-2.4
1,533,701	+		MMJJ_RS08315	0.53	+3.0
1,533,729	-		MMJJ_RS08315	0.58	+1.0
1,533,730	+		MMJJ_RS08315	0.58	-2.6
1,533,746	-		MMJJ_RS08315	0.61	-2.1
1,533,771	-		MMJJ_RS08315	0.66	-1.3
1,533,823	-		MMJJ_RS08315	0.75	-0.6
1,533,824	+		MMJJ_RS08315	0.75	-2.9
1,533,824	+		MMJJ_RS08315	0.75	-0.4
1,533,846	+		MMJJ_RS08315	0.79	-0.6
1,533,958	-				-0.7
1,533,967	-				+1.0
1,533,968	+				+0.1
1,533,981	+				+1.6
1,533,991	+				+0.5
1,534,003	-				-1.5
1,534,003	-				+2.6
1,534,007	-				+0.4
1,534,007	-				+2.7
1,534,008	+				+2.2
1,534,019	-				-2.0
1,534,019	-				-1.1
1,534,020	+				-0.8
1,534,024	+				+0.3
1,534,024	+				+1.2
1,534,129	-		MMJJ_RS08320	0.23	-1.8
1,534,140	+		MMJJ_RS08320	0.25	-2.1
1,534,140	+		MMJJ_RS08320	0.25	-0.8
1,534,229	-		MMJJ_RS08320	0.39	-1.8
1,534,325	-		MMJJ_RS08320	0.55	-1.8
1,534,553	-				+0.2
1,534,756	-		MMJJ_RS08325	0.20	-1.4
1,534,782	-		MMJJ_RS08325	0.24	-0.8
1,534,993	-		MMJJ_RS08325	0.55	+0.6
1,535,200	-		MMJJ_RS08325	0.84	-4.1
1,535,200	-		MMJJ_RS08325	0.84	+1.2
1,535,244	-				+2.0
1,535,268	-				-0.8
1,535,344	-				+2.6
1,535,357	-				-1.4
1,535,357	-				+1.2
1,535,357	-				-0.4
1,535,370	-				-1.5
1,535,370	-				+2.6
1,535,372	-				+1.9
1,535,383	+				-0.2
1,535,386	+				-0.6
1,535,386	+				-1.6
1,535,386	+				+2.9
1,535,386	+				-0.0
1,535,389	-				+0.9
1,535,406	-				+3.0
1,535,426	-				+0.6
1,535,427	+				-1.8
1,535,458	-				+1.5
1,535,599	+		MMJJ_RS08330	0.12	+0.2
1,535,764	+		MMJJ_RS08330	0.25	+0.2
1,535,783	-		MMJJ_RS08330	0.27	-1.1
1,535,872	+		MMJJ_RS08330	0.34	-2.1
1,535,899	+		MMJJ_RS08330	0.36	-1.8
1,536,153	+		MMJJ_RS08330	0.57	+1.2
1,536,156	+		MMJJ_RS08330	0.57	-0.8