Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08230

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,514,681	-				+1.2
1,514,708	+		MMJJ_RS08220	0.90	-2.0
1,514,725	-				-1.6
1,514,730	+				-0.8
1,514,911	+				-1.7
1,514,911	+				-1.3
1,514,915	-				-2.1
1,514,915	-				-1.1
1,514,916	+				+4.2
1,514,916	+				-1.1
1,514,918	+				-2.5
1,514,918	+				-0.3
1,514,933	-				+2.1
1,514,933	-				-2.0
1,514,933	-				-2.6
1,514,938	-				+1.2
1,514,939	+				-1.1
1,514,939	+				-0.4
1,514,940	-				+2.3
1,514,940	-				-2.4
1,514,940	-				-1.0
1,514,940	-				-3.4
1,514,940	-				+3.5
1,514,940	-				-2.9
1,514,941	+				+2.6
1,514,941	+				+1.9
1,514,941	+				+3.9
1,514,941	+				+1.0
1,514,941	+				-1.9
1,514,941	+				+1.8
1,514,941	+				-0.4
1,514,941	+				+0.5
1,514,941	+				-2.2
1,514,942	-				+2.6
1,514,942	-				-1.1
1,514,942	-				+0.6
1,514,942	-				-0.7
1,514,942	-				+1.1
1,514,942	-				+2.9
1,514,942	-				+0.2
1,514,942	-				-1.4
1,514,942	-				+1.1
1,514,942	-				+0.6
1,514,942	-				+4.5
1,514,942	-				+0.2
1,514,942	-				-0.6
1,514,943	+				-0.0
1,514,943	+				-0.6
1,514,943	+				-0.4
1,514,943	+				+1.0
1,514,943	+				-1.0
1,514,943	+				-0.8
1,514,943	+				+5.0
1,514,943	+				+3.7
1,514,944	-				+2.3
1,514,944	-				+1.2
1,514,944	-				-1.1
1,514,944	-				-1.1
1,514,944	-				-1.3
1,514,944	-				-1.1
1,514,944	-				+0.8
1,514,945	+				-1.4
1,514,945	+				-1.8
1,514,945	+				-0.8
1,514,947	-				-0.4
1,514,948	+				-2.2
1,514,948	+				-1.4
1,514,948	+				-1.5
1,514,982	-				-0.6
1,514,982	-				-1.5
1,515,014	-				+4.0
1,515,015	+				-1.8
1,515,020	+				-0.8
1,515,020	+				+1.9
1,515,030	-				-1.8
1,515,066	+		MMJJ_RS08225	0.15	-2.0
1,515,120	-		MMJJ_RS08225	0.27	-2.7
1,515,121	+		MMJJ_RS08225	0.27	+0.2
1,515,121	+		MMJJ_RS08225	0.27	+0.5
1,515,121	+		MMJJ_RS08225	0.27	+4.6
1,515,131	+		MMJJ_RS08225	0.30	-2.0
1,515,131	+		MMJJ_RS08225	0.30	+1.2
1,515,138	+		MMJJ_RS08225	0.31	+3.6
1,515,355	-		MMJJ_RS08225	0.79	+0.6
1,515,362	-		MMJJ_RS08225	0.81	-1.6
1,515,435	+				-1.1
1,515,436	-				+1.0
1,515,437	+				-1.0
1,515,462	+				+1.2
1,515,470	-				-2.1
1,515,470	-				-0.4
1,515,489	-				-2.2
1,515,498	+				-0.4
1,515,498	+				+1.4
1,515,524	+				-1.1
1,515,550	+				+1.2
1,515,699	+		MMJJ_RS08230	0.25	-1.6
1,515,700	-		MMJJ_RS08230	0.25	-1.1
1,515,715	-		MMJJ_RS08230	0.27	-2.1
1,515,716	+		MMJJ_RS08230	0.28	-0.4
1,515,802	+		MMJJ_RS08230	0.39	+0.2
1,515,986	-		MMJJ_RS08230	0.65	-0.4
1,516,181	+				+1.2
1,516,225	+				+0.5
1,516,250	-				-0.9
1,516,254	-				-1.5
1,516,283	-				+4.0
1,516,283	-				-2.6
1,516,283	-				-2.1
1,516,284	+				-0.6
1,516,284	+				+1.0
1,516,296	+				+0.7
1,516,317	-				-1.1
1,516,317	-				-1.4
1,516,318	+				+0.1
1,516,318	+				+6.5
1,516,327	-				+0.2
1,516,328	+				-0.8
1,516,328	+				-2.2
1,516,328	+				-1.0
1,516,350	-				+2.0
1,516,354	-				+0.2
1,516,355	+				+1.9
1,516,458	+		MMJJ_RS08235	0.28	-2.3
1,516,511	+		MMJJ_RS08235	0.47	-2.1
1,516,511	+		MMJJ_RS08235	0.47	+0.2
1,516,590	+		MMJJ_RS08235	0.76	+2.2
1,516,653	-				+1.1
1,516,657	-				-0.2
1,516,672	-				-2.8
1,516,714	-				+1.8
1,516,715	+				-3.7
1,516,722	-				-2.0
1,516,754	+				-0.8
1,516,756	-				-3.9
1,516,756	-				-0.3
1,516,757	+				+2.5
1,516,758	-				+0.2
1,516,759	+				+3.8
1,516,759	+				+1.8
1,516,764	+				-1.5
1,516,782	+				-0.5
1,516,782	+				+1.1
1,516,800	-		MMJJ_RS08240	0.12	-1.9
1,516,800	-		MMJJ_RS08240	0.12	+1.8
1,516,801	+		MMJJ_RS08240	0.12	+1.1
1,516,812	+		MMJJ_RS08240	0.14	+1.7
1,516,813	-		MMJJ_RS08240	0.14	-1.6
1,516,829	+		MMJJ_RS08240	0.17	+1.7
1,516,853	+		MMJJ_RS08240	0.22	+0.5
1,516,915	+		MMJJ_RS08240	0.33	-0.4
1,516,915	+		MMJJ_RS08240	0.33	+0.4
1,516,923	-		MMJJ_RS08240	0.34	+0.5
1,516,923	-		MMJJ_RS08240	0.34	+0.6
1,516,924	+		MMJJ_RS08240	0.35	-0.5
1,516,924	+		MMJJ_RS08240	0.35	-3.9
1,516,924	+		MMJJ_RS08240	0.35	+1.0
1,516,924	+		MMJJ_RS08240	0.35	-2.0
1,516,924	+		MMJJ_RS08240	0.35	+3.1
1,516,924	+		MMJJ_RS08240	0.35	-0.9
1,516,928	-		MMJJ_RS08240	0.35	+3.2
1,516,970	-		MMJJ_RS08240	0.43	+3.0
1,517,004	-		MMJJ_RS08240	0.49	+1.4
1,517,004	-		MMJJ_RS08240	0.49	-0.5
1,517,005	+		MMJJ_RS08240	0.50	-0.2
1,517,024	-		MMJJ_RS08240	0.53	+1.0
1,517,024	-		MMJJ_RS08240	0.53	-0.8
1,517,052	-		MMJJ_RS08240	0.58	+0.5
1,517,054	-		MMJJ_RS08240	0.59	-1.8
1,517,072	-		MMJJ_RS08240	0.62	+2.0
1,517,073	+		MMJJ_RS08240	0.62	+3.4
1,517,083	-		MMJJ_RS08240	0.64	+1.5
1,517,097	+		MMJJ_RS08240	0.66	+1.6
1,517,156	-		MMJJ_RS08240	0.77	+0.4
1,517,170	-		MMJJ_RS08240	0.80	+0.7
1,517,171	+		MMJJ_RS08240	0.80	+2.4
1,517,171	+		MMJJ_RS08240	0.80	-1.4
1,517,173	-		MMJJ_RS08240	0.80	+1.5
1,517,173	-		MMJJ_RS08240	0.80	+0.3
1,517,173	-		MMJJ_RS08240	0.80	-1.4
1,517,175	-		MMJJ_RS08240	0.81	+0.5
1,517,175	-		MMJJ_RS08240	0.81	-2.0
1,517,175	-		MMJJ_RS08240	0.81	+2.8
1,517,175	-		MMJJ_RS08240	0.81	-2.6
1,517,176	+		MMJJ_RS08240	0.81	-2.1
1,517,176	+		MMJJ_RS08240	0.81	-1.5
1,517,176	+		MMJJ_RS08240	0.81	+0.7
1,517,176	+		MMJJ_RS08240	0.81	-1.0
1,517,176	+		MMJJ_RS08240	0.81	-0.9
1,517,197	-		MMJJ_RS08240	0.85	-1.6
1,517,201	-		MMJJ_RS08240	0.86	-1.7
1,517,201	-		MMJJ_RS08240	0.86	+0.8
1,517,202	+		MMJJ_RS08240	0.86	-2.1
1,517,226	-				+1.8
1,517,226	-				+0.2