Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08130

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,490,961	-		MMJJ_RS08125	0.11	+6.2
1,490,962	+		MMJJ_RS08125	0.11	-0.8
1,490,962	+		MMJJ_RS08125	0.11	-2.3
1,490,962	+		MMJJ_RS08125	0.11	-3.4
1,490,982	+		MMJJ_RS08125	0.13	-0.1
1,491,114	-		MMJJ_RS08125	0.25	+0.4
1,491,115	+		MMJJ_RS08125	0.25	+3.3
1,491,238	+		MMJJ_RS08125	0.37	+1.8
1,491,241	-		MMJJ_RS08125	0.37	+0.4
1,491,305	-		MMJJ_RS08125	0.43	-1.6
1,491,306	+		MMJJ_RS08125	0.43	+0.2
1,491,309	+		MMJJ_RS08125	0.43	-1.6
1,491,309	+		MMJJ_RS08125	0.43	+5.1
1,491,311	-		MMJJ_RS08125	0.44	+2.1
1,491,311	-		MMJJ_RS08125	0.44	+1.3
1,491,453	-		MMJJ_RS08125	0.57	-1.1
1,491,454	+		MMJJ_RS08125	0.57	+0.9
1,491,454	+		MMJJ_RS08125	0.57	+1.1
1,491,464	+		MMJJ_RS08125	0.58	-2.0
1,491,467	+		MMJJ_RS08125	0.58	+1.1
1,491,488	+		MMJJ_RS08125	0.60	+2.2
1,491,525	-		MMJJ_RS08125	0.64	-0.4
1,491,525	-		MMJJ_RS08125	0.64	-1.2
1,491,526	+		MMJJ_RS08125	0.64	+1.5
1,491,526	+		MMJJ_RS08125	0.64	+1.6
1,491,527	-		MMJJ_RS08125	0.64	-3.6
1,491,527	-		MMJJ_RS08125	0.64	-2.8
1,491,527	-		MMJJ_RS08125	0.64	+2.0
1,491,528	+		MMJJ_RS08125	0.64	-1.4
1,491,528	+		MMJJ_RS08125	0.64	+2.0
1,491,546	-		MMJJ_RS08125	0.66	-0.9
1,491,546	-		MMJJ_RS08125	0.66	-1.3
1,491,546	-		MMJJ_RS08125	0.66	+1.6
1,491,547	+		MMJJ_RS08125	0.66	+3.0
1,491,550	+		MMJJ_RS08125	0.66	+0.9
1,491,633	-		MMJJ_RS08125	0.74	-2.5
1,491,684	+		MMJJ_RS08125	0.79	-0.8
1,491,708	-		MMJJ_RS08125	0.81	+1.8
1,491,708	-		MMJJ_RS08125	0.81	+4.2
1,491,738	-		MMJJ_RS08125	0.84	+1.2
1,491,744	+		MMJJ_RS08125	0.84	+4.2
1,491,744	+		MMJJ_RS08125	0.84	+2.5
1,491,746	+		MMJJ_RS08125	0.85	-1.8
1,491,793	-		MMJJ_RS08125	0.89	+1.0
1,491,806	+				+1.9
1,491,832	-				-0.1
1,491,833	+				+2.3
1,491,866	+				+0.3
1,491,872	-				+1.3
1,491,872	-				+0.3
1,491,916	+				+2.7
1,491,928	-				+3.1
1,491,953	-				+1.3
1,491,954	+				+1.4
1,492,249	-				-0.4
1,492,545	+		MMJJ_RS08130	0.48	-3.4
1,493,214	-				-1.6
1,493,283	-				+0.2
1,493,285	-				-1.8
1,493,285	-				+5.9
1,493,285	-				-1.1
1,493,285	-				-1.3
1,493,285	-				+0.2
1,493,286	+				-2.2
1,493,286	+				+2.4
1,493,286	+				+0.2
1,493,286	+				+2.5
1,493,286	+				-2.1
1,493,286	+				+0.5
1,493,286	+				-1.1
1,493,286	+				-1.7
1,493,289	-				-2.3
1,493,289	-				-1.9
1,493,289	-				+2.8
1,493,290	+				-1.6
1,493,290	+				+3.4
1,493,291	-				+0.3
1,493,291	-				-0.4
1,493,292	+				-0.8
1,493,292	+				-1.4
1,493,292	+				-2.4
1,493,319	+				-2.0
1,493,337	-				-0.0
1,493,407	-		MMJJ_RS08135	0.18	-2.7
1,493,412	-		MMJJ_RS08135	0.19	-2.7
1,493,412	-		MMJJ_RS08135	0.19	-1.1
1,493,413	+		MMJJ_RS08135	0.19	-1.6
1,493,413	+		MMJJ_RS08135	0.19	-0.4
1,493,413	+		MMJJ_RS08135	0.19	-3.1
1,493,458	+		MMJJ_RS08135	0.31	-2.2
1,493,503	-		MMJJ_RS08135	0.43	-2.1
1,493,504	+		MMJJ_RS08135	0.43	-2.5
1,493,593	-		MMJJ_RS08135	0.67	+0.1
1,493,718	-				-2.5
1,493,721	-				+2.8
1,493,742	-				-1.4
1,493,742	-				+2.3
1,493,742	-				+4.8
1,493,742	-				-1.8
1,493,743	+				+0.6
1,493,802	-				-2.0
1,493,821	-				+3.6
1,493,822	+				-0.4
1,493,828	+				-3.8
1,493,828	+				-1.4
1,493,832	-				-0.4
1,493,833	+				-1.1
1,493,836	+				+0.3
1,493,898	-				-2.0
1,493,899	+				+1.2
1,493,899	+				+2.2
1,493,914	+				-0.3
1,493,924	+				-2.2
1,493,928	+				+2.7
1,493,936	+				+1.2
1,493,936	+				+0.9
1,493,936	+				-1.5