Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08080

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,480,808	+		MMJJ_RS08075	0.58	+2.3
1,480,830	-		MMJJ_RS08075	0.59	+1.6
1,480,905	-		MMJJ_RS08075	0.63	-0.5
1,480,906	+		MMJJ_RS08075	0.63	-2.6
1,480,944	-		MMJJ_RS08075	0.65	-1.3
1,480,944	-		MMJJ_RS08075	0.65	+2.1
1,480,944	-		MMJJ_RS08075	0.65	-1.1
1,480,945	+		MMJJ_RS08075	0.65	-0.6
1,480,986	-		MMJJ_RS08075	0.67	-3.4
1,480,987	+		MMJJ_RS08075	0.67	-2.9
1,481,005	-		MMJJ_RS08075	0.68	+2.1
1,481,039	+		MMJJ_RS08075	0.69	-2.4
1,481,065	-		MMJJ_RS08075	0.71	-1.7
1,481,114	-		MMJJ_RS08075	0.73	+2.4
1,481,122	+		MMJJ_RS08075	0.73	+1.9
1,481,122	+		MMJJ_RS08075	0.73	-1.0
1,481,143	-		MMJJ_RS08075	0.74	+1.3
1,481,143	-		MMJJ_RS08075	0.74	+0.8
1,481,143	-		MMJJ_RS08075	0.74	+0.5
1,481,143	-		MMJJ_RS08075	0.74	-1.0
1,481,144	+		MMJJ_RS08075	0.74	-2.9
1,481,144	+		MMJJ_RS08075	0.74	-1.4
1,481,144	+		MMJJ_RS08075	0.74	-2.4
1,481,145	-		MMJJ_RS08075	0.75	-0.8
1,481,146	+		MMJJ_RS08075	0.75	-0.2
1,481,146	+		MMJJ_RS08075	0.75	+0.2
1,481,146	+		MMJJ_RS08075	0.75	+0.5
1,481,147	-		MMJJ_RS08075	0.75	-0.9
1,481,147	-		MMJJ_RS08075	0.75	+0.2
1,481,147	-		MMJJ_RS08075	0.75	+0.1
1,481,148	+		MMJJ_RS08075	0.75	+0.4
1,481,148	+		MMJJ_RS08075	0.75	-2.1
1,481,148	+		MMJJ_RS08075	0.75	+0.7
1,481,148	+		MMJJ_RS08075	0.75	+2.1
1,481,153	-		MMJJ_RS08075	0.75	+2.2
1,481,227	+		MMJJ_RS08075	0.79	-1.2
1,481,284	-		MMJJ_RS08075	0.81	-2.7
1,481,286	-		MMJJ_RS08075	0.82	+1.3
1,481,289	-		MMJJ_RS08075	0.82	-2.6
1,481,290	+		MMJJ_RS08075	0.82	-1.8
1,481,290	+		MMJJ_RS08075	0.82	-1.3
1,481,294	+		MMJJ_RS08075	0.82	-3.6
1,481,418	-		MMJJ_RS08075	0.88	+1.4
1,481,434	-		MMJJ_RS08075	0.89	+0.1
1,481,436	-		MMJJ_RS08075	0.89	+0.3
1,481,437	+		MMJJ_RS08075	0.89	+3.3
1,481,507	+				-1.7
1,481,579	+				-1.1
1,481,585	+				-0.4
1,481,591	-				-0.4
1,481,591	-				-1.1
1,481,592	+				+1.8
1,481,638	-				+4.0
1,481,638	-				+3.0
1,481,692	-				+2.3
1,481,693	+				+1.1
1,481,693	+				+0.1
1,481,693	+				-0.7
1,481,693	+				+1.4
1,481,700	-				-0.3
1,481,700	-				+3.1
1,481,700	-				-3.8
1,481,700	-				-0.9
1,481,700	-				+2.1
1,481,700	-				-2.6
1,481,700	-				-1.2
1,481,700	-				-1.6
1,481,700	-				+2.6
1,481,700	-				+0.5
1,481,700	-				+0.3
1,481,700	-				-2.5
1,481,701	+				-0.5
1,481,701	+				+3.4
1,481,701	+				-0.9
1,481,701	+				-1.2
1,481,701	+				+1.2
1,481,701	+				+0.5
1,481,702	-				+1.8
1,481,702	-				-1.6
1,481,702	-				+0.2
1,481,702	-				+0.8
1,481,703	+				-2.4
1,481,703	+				+4.0
1,481,703	+				-2.1
1,481,705	-				+1.8
1,481,705	-				-1.4
1,481,705	-				-3.0
1,481,705	-				-2.8
1,481,705	-				+0.4
1,481,706	+				-1.4
1,481,706	+				-1.6
1,481,719	-				-0.4
1,481,719	-				+0.6
1,481,722	+				+1.0
1,481,722	+				+2.5
1,481,723	-				-1.7
1,481,723	-				+1.2
1,481,723	-				-1.8
1,481,724	+				-1.5
1,481,724	+				+3.3
1,481,724	+				+1.2
1,481,724	+				-1.0
1,481,732	+				+0.5
1,481,732	+				+0.5
1,481,739	+				+1.3
1,481,749	+				+0.5
1,481,818	+				-0.4
1,481,818	+				-1.0
1,481,818	+				-1.1
1,481,830	-				+2.2
1,481,831	+				-0.6
1,481,832	-				-0.4
1,481,833	+				+0.6
1,481,833	+				-2.4
1,481,878	-				-2.7
1,481,879	+				-3.1
1,482,080	+		MMJJ_RS08080	0.24	-1.5
1,482,080	+		MMJJ_RS08080	0.24	-1.1
1,482,100	+		MMJJ_RS08080	0.25	-1.1
1,482,106	+		MMJJ_RS08080	0.26	+0.5
1,482,150	-		MMJJ_RS08080	0.29	-0.0
1,482,151	+		MMJJ_RS08080	0.29	-0.4
1,482,204	-		MMJJ_RS08080	0.34	+0.2
1,482,370	+		MMJJ_RS08080	0.47	-1.1
1,482,381	+		MMJJ_RS08080	0.48	-1.2
1,482,433	+		MMJJ_RS08080	0.52	-1.5
1,482,433	+		MMJJ_RS08080	0.52	-2.4
1,482,537	-		MMJJ_RS08080	0.60	-0.4
1,482,565	+		MMJJ_RS08080	0.63	-1.4
1,482,615	-		MMJJ_RS08080	0.67	-2.0
1,482,616	+		MMJJ_RS08080	0.67	-3.0
1,482,625	+		MMJJ_RS08080	0.67	-2.7
1,482,679	-		MMJJ_RS08080	0.72	-0.1
1,482,680	+		MMJJ_RS08080	0.72	-0.9
1,482,681	-		MMJJ_RS08080	0.72	-2.6
1,482,682	+		MMJJ_RS08080	0.72	-1.4
1,482,694	-		MMJJ_RS08080	0.73	-2.1
1,482,713	-		MMJJ_RS08080	0.75	+0.2
1,482,731	+		MMJJ_RS08080	0.76	-2.6
1,482,761	+		MMJJ_RS08080	0.78	-2.6
1,482,788	+		MMJJ_RS08080	0.81	-1.1
1,482,867	-		MMJJ_RS08080	0.87	-1.4
1,482,868	+		MMJJ_RS08080	0.87	-0.3
1,482,868	+		MMJJ_RS08080	0.87	-3.0
1,482,879	+		MMJJ_RS08080	0.88	-0.8
1,482,883	+		MMJJ_RS08080	0.88	-1.1
1,482,903	-		MMJJ_RS08080	0.90	-1.4
1,482,922	-				+1.8
1,482,996	-				-3.1
1,483,029	+				-1.1
1,483,744	+				-0.8
1,483,772	-				-0.8