Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08035

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,469,835	+		MMJJ_RS08025	0.36	-0.8
1,469,835	+		MMJJ_RS08025	0.36	-1.5
1,469,912	-		MMJJ_RS08025	0.61	-2.1
1,469,913	+		MMJJ_RS08025	0.62	-1.8
1,469,974	-		MMJJ_RS08025	0.82	-2.5
1,469,975	+		MMJJ_RS08025	0.82	+0.6
1,469,987	+		MMJJ_RS08025	0.86	-1.0
1,470,020	-				-2.2
1,470,033	-				+0.5
1,470,055	+				-0.9
1,470,060	-				+2.4
1,470,063	-				-2.0
1,470,064	+				+1.9
1,470,068	+				+1.9
1,470,161	-				+0.6
1,470,164	-				+1.3
1,470,243	-		MMJJ_RS08030	0.19	+1.0
1,470,362	+		MMJJ_RS08030	0.37	+0.2
1,470,391	-		MMJJ_RS08030	0.41	+3.1
1,470,409	-		MMJJ_RS08030	0.44	-0.9
1,470,409	-		MMJJ_RS08030	0.44	-0.5
1,470,472	+		MMJJ_RS08030	0.54	+0.3
1,470,473	-		MMJJ_RS08030	0.54	-0.8
1,470,539	-		MMJJ_RS08030	0.64	-0.2
1,470,540	+		MMJJ_RS08030	0.64	+1.4
1,470,545	-		MMJJ_RS08030	0.65	-2.5
1,470,570	-		MMJJ_RS08030	0.69	-2.6
1,470,571	+		MMJJ_RS08030	0.69	-1.5
1,470,581	+		MMJJ_RS08030	0.71	-0.6
1,470,608	-		MMJJ_RS08030	0.75	+0.5
1,470,609	+		MMJJ_RS08030	0.75	-2.4
1,470,614	-		MMJJ_RS08030	0.76	+0.4
1,470,615	+		MMJJ_RS08030	0.76	-0.8
1,470,618	-		MMJJ_RS08030	0.76	+3.0
1,470,618	-		MMJJ_RS08030	0.76	+0.7
1,470,619	+		MMJJ_RS08030	0.77	+0.3
1,470,625	+		MMJJ_RS08030	0.77	+2.1
1,470,630	+		MMJJ_RS08030	0.78	+1.9
1,470,630	+		MMJJ_RS08030	0.78	+2.9
1,470,635	-		MMJJ_RS08030	0.79	-1.2
1,470,643	-		MMJJ_RS08030	0.80	-0.9
1,470,643	-		MMJJ_RS08030	0.80	-0.8
1,470,644	+		MMJJ_RS08030	0.80	+1.5
1,470,648	+		MMJJ_RS08030	0.81	-1.4
1,470,665	-		MMJJ_RS08030	0.84	-0.2
1,470,723	-				+2.1
1,470,726	-				-2.5
1,470,726	-				-1.2
1,470,726	-				+2.8
1,470,727	+				+1.7
1,470,732	-				+3.4
1,470,750	-				-1.9
1,470,775	+				-1.9
1,470,791	+				-1.1
1,470,791	+				+0.8
1,470,791	+				-0.5
1,470,792	-				+0.9
1,470,793	+				+1.4
1,470,809	-				+0.2
1,471,027	-		MMJJ_RS08035	0.37	-1.2
1,471,027	-		MMJJ_RS08035	0.37	-1.1
1,471,028	+		MMJJ_RS08035	0.37	-2.4
1,471,042	+		MMJJ_RS08035	0.39	+0.2
1,471,043	-		MMJJ_RS08035	0.39	+0.0
1,471,146	-		MMJJ_RS08035	0.55	+0.4
1,471,146	-				+1.2
1,471,146	-		MMJJ_RS08035	0.55	-1.4
1,471,146	-		MMJJ_RS08035	0.55	+0.6
1,471,154	+		MMJJ_RS08035	0.56	-0.9
1,471,242	+		MMJJ_RS08035	0.69	-0.2
1,471,262	+		MMJJ_RS08035	0.72	-0.3
1,471,365	-		MMJJ_RS08035	0.88	-2.0
1,471,370	-		MMJJ_RS08035	0.89	-1.8
1,471,370	-		MMJJ_RS08035	0.89	-1.2
1,471,371	+		MMJJ_RS08035	0.89	+0.2
1,471,371	+		MMJJ_RS08035	0.89	-1.1
1,471,401	-				-2.4
1,471,403	-				+0.2
1,471,403	-				+0.5
1,471,404	+				-0.4
1,471,413	-				-0.0
1,471,454	-				+3.2
1,471,455	+				+0.7
1,471,455	+				-0.1
1,471,455	+				-0.2
1,471,460	-				+1.0
1,471,461	+				+1.6
1,471,472	-				-0.1
1,471,473	+				+1.2
1,471,473	+				-1.1
1,471,473	+				-1.1
1,471,476	+				+2.5
1,471,476	+				-1.2
1,471,477	-				+1.2
1,471,477	-				+0.9
1,471,477	-				-1.1
1,471,478	+				-0.2
1,471,478	+				+2.9
1,471,485	+				+1.4
1,471,492	+				+1.2
1,471,492	+				+0.2
1,471,521	-				-0.6
1,471,522	+				-0.5
1,471,540	-				+3.2
1,471,541	+				+3.4
1,471,541	+				-1.4
1,471,541	+				-2.6
1,471,550	-				-1.1
1,471,550	-				-1.8
1,471,578	-				-2.1
1,471,578	-				+1.9
1,471,579	+				-0.1
1,471,593	-				+2.7
1,471,602	-				+1.8
1,471,667	-		MMJJ_RS08040	0.12	+2.1
1,471,668	+		MMJJ_RS08040	0.12	+1.2
1,471,716	-		MMJJ_RS08040	0.16	-2.8
1,471,723	+		MMJJ_RS08040	0.17	+0.4
1,471,735	+		MMJJ_RS08040	0.18	-1.4
1,471,911	-		MMJJ_RS08040	0.33	-1.1
1,471,911	-		MMJJ_RS08040	0.33	-1.6
1,471,911	-		MMJJ_RS08040	0.33	-1.4
1,471,917	-		MMJJ_RS08040	0.34	+3.1
1,471,928	-		MMJJ_RS08040	0.35	-1.9
1,471,956	+		MMJJ_RS08040	0.37	-0.4
1,471,967	-		MMJJ_RS08040	0.38	+2.5
1,471,968	+		MMJJ_RS08040	0.38	-1.1
1,472,017	+		MMJJ_RS08040	0.42	+3.6
1,472,017	+		MMJJ_RS08040	0.42	-2.3
1,472,039	-		MMJJ_RS08040	0.44	+2.9
1,472,096	+		MMJJ_RS08040	0.49	+1.6
1,472,099	-		MMJJ_RS08040	0.50	+2.2
1,472,099	-		MMJJ_RS08040	0.50	-1.3
1,472,099	-		MMJJ_RS08040	0.50	+1.1
1,472,099	-		MMJJ_RS08040	0.50	-0.8
1,472,100	+		MMJJ_RS08040	0.50	-2.4
1,472,100	+		MMJJ_RS08040	0.50	+0.9
1,472,100	+		MMJJ_RS08040	0.50	+4.3
1,472,104	-		MMJJ_RS08040	0.50	+2.6
1,472,104	-		MMJJ_RS08040	0.50	-2.0
1,472,105	+		MMJJ_RS08040	0.50	+3.6
1,472,198	+		MMJJ_RS08040	0.58	+1.9
1,472,211	+		MMJJ_RS08040	0.59	-3.3
1,472,212	-		MMJJ_RS08040	0.59	+3.6
1,472,320	+		MMJJ_RS08040	0.69	+4.0
1,472,324	-		MMJJ_RS08040	0.69	-1.9
1,472,325	+		MMJJ_RS08040	0.69	-1.2
1,472,325	+		MMJJ_RS08040	0.69	-3.4
1,472,363	-		MMJJ_RS08040	0.72	+0.3
1,472,364	+		MMJJ_RS08040	0.72	-2.8
1,472,364	+		MMJJ_RS08040	0.72	+1.5
1,472,381	+		MMJJ_RS08040	0.74	+0.6
1,472,383	-		MMJJ_RS08040	0.74	-3.9
1,472,384	+		MMJJ_RS08040	0.74	-1.2
1,472,415	-		MMJJ_RS08040	0.77	+2.4
1,472,420	-		MMJJ_RS08040	0.77	-1.6