Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08025

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,468,734	-		MMJJ_RS08020	0.13	-0.4
1,468,734	-		MMJJ_RS08020	0.13	-1.6
1,469,025	-		MMJJ_RS08020	0.41	-1.4
1,469,026	+		MMJJ_RS08020	0.41	-0.7
1,469,030	-		MMJJ_RS08020	0.41	-2.1
1,469,031	+		MMJJ_RS08020	0.41	-1.1
1,469,031	+		MMJJ_RS08020	0.41	-1.1
1,469,031	+		MMJJ_RS08020	0.41	-0.0
1,469,054	-		MMJJ_RS08020	0.43	-0.0
1,469,054	-		MMJJ_RS08020	0.43	-0.6
1,469,058	-		MMJJ_RS08020	0.44	-2.7
1,469,058	-		MMJJ_RS08020	0.44	-2.4
1,469,094	+		MMJJ_RS08020	0.47	-1.6
1,469,120	-		MMJJ_RS08020	0.50	-1.1
1,469,192	-		MMJJ_RS08020	0.56	-2.1
1,469,257	-		MMJJ_RS08020	0.63	-1.6
1,469,258	+		MMJJ_RS08020	0.63	-1.1
1,469,397	-		MMJJ_RS08020	0.76	-0.4
1,469,447	+		MMJJ_RS08020	0.80	-1.6
1,469,449	-		MMJJ_RS08020	0.81	-1.6
1,469,484	+		MMJJ_RS08020	0.84	-1.6
1,469,489	-		MMJJ_RS08020	0.84	-0.0
1,469,549	-				-1.5
1,469,549	-				-2.0
1,469,550	+				-2.4
1,469,642	+				-1.6
1,469,682	+				-1.0
1,469,689	-				-0.5
1,469,689	-				-3.3
1,469,690	+				+1.2
1,469,694	-				+1.7
1,469,695	+				-3.5
1,469,696	-				-3.0
1,469,696	-				-3.1
1,469,696	-				+1.8
1,469,697	+				-0.6
1,469,702	+				-1.8
1,469,706	-				-1.4
1,469,706	-				+1.6
1,469,706	-				-1.1
1,469,706	-				-0.7
1,469,707	+				+1.6
1,469,710	-				+0.8
1,469,710	-				-1.9
1,469,710	-				-0.1
1,469,710	-				-0.8
1,469,711	+				-0.0
1,469,711	+				-1.8
1,469,711	+				+0.1
1,469,711	+				-0.4
1,469,711	+				-0.1
1,469,711	+				-1.3
1,469,712	-				+1.3
1,469,713	+				-0.4
1,469,713	+				+0.3
1,469,713	+				-1.0
1,469,835	+		MMJJ_RS08025	0.36	-0.8
1,469,835	+		MMJJ_RS08025	0.36	-1.5
1,469,912	-		MMJJ_RS08025	0.61	-2.1
1,469,913	+		MMJJ_RS08025	0.62	-1.8
1,469,974	-		MMJJ_RS08025	0.82	-2.5
1,469,975	+		MMJJ_RS08025	0.82	+0.6
1,469,987	+		MMJJ_RS08025	0.86	-1.0
1,470,020	-				-2.2
1,470,033	-				+0.5
1,470,055	+				-0.9
1,470,060	-				+2.4
1,470,063	-				-2.0
1,470,064	+				+1.9
1,470,068	+				+1.9
1,470,161	-				+0.6
1,470,164	-				+1.3
1,470,243	-		MMJJ_RS08030	0.19	+1.0
1,470,362	+		MMJJ_RS08030	0.37	+0.2
1,470,391	-		MMJJ_RS08030	0.41	+3.1
1,470,409	-		MMJJ_RS08030	0.44	-0.9
1,470,409	-		MMJJ_RS08030	0.44	-0.5
1,470,472	+		MMJJ_RS08030	0.54	+0.3
1,470,473	-		MMJJ_RS08030	0.54	-0.8
1,470,539	-		MMJJ_RS08030	0.64	-0.2
1,470,540	+		MMJJ_RS08030	0.64	+1.4
1,470,545	-		MMJJ_RS08030	0.65	-2.5
1,470,570	-		MMJJ_RS08030	0.69	-2.6
1,470,571	+		MMJJ_RS08030	0.69	-1.5
1,470,581	+		MMJJ_RS08030	0.71	-0.6
1,470,608	-		MMJJ_RS08030	0.75	+0.5
1,470,609	+		MMJJ_RS08030	0.75	-2.4
1,470,614	-		MMJJ_RS08030	0.76	+0.4
1,470,615	+		MMJJ_RS08030	0.76	-0.8
1,470,618	-		MMJJ_RS08030	0.76	+3.0
1,470,618	-		MMJJ_RS08030	0.76	+0.7
1,470,619	+		MMJJ_RS08030	0.77	+0.3
1,470,625	+		MMJJ_RS08030	0.77	+2.1
1,470,630	+		MMJJ_RS08030	0.78	+1.9
1,470,630	+		MMJJ_RS08030	0.78	+2.9
1,470,635	-		MMJJ_RS08030	0.79	-1.2
1,470,643	-		MMJJ_RS08030	0.80	-0.9
1,470,643	-		MMJJ_RS08030	0.80	-0.8
1,470,644	+		MMJJ_RS08030	0.80	+1.5
1,470,648	+		MMJJ_RS08030	0.81	-1.4
1,470,665	-		MMJJ_RS08030	0.84	-0.2
1,470,723	-				+2.1
1,470,726	-				-2.5
1,470,726	-				-1.2
1,470,726	-				+2.8
1,470,727	+				+1.7
1,470,732	-				+3.4
1,470,750	-				-1.9
1,470,775	+				-1.9
1,470,791	+				-1.1
1,470,791	+				+0.8
1,470,791	+				-0.5
1,470,792	-				+0.9
1,470,793	+				+1.4
1,470,809	-				+0.2
1,471,027	-		MMJJ_RS08035	0.37	-1.2
1,471,027	-		MMJJ_RS08035	0.37	-1.1
1,471,028	+		MMJJ_RS08035	0.37	-2.4