Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS07975

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,462,053	+		MMJJ_RS07970	0.73	-2.6
1,462,093	+		MMJJ_RS07970	0.76	-0.8
1,462,246	+		MMJJ_RS07970	0.90	-1.6
1,462,299	+				+0.2
1,462,327	-				-1.4
1,462,345	-				-1.4
1,462,364	+				-1.4
1,462,388	-				+1.9
1,462,392	-				-2.5
1,462,392	-				-0.8
1,462,393	+				-0.7
1,462,412	-				+0.7
1,462,412	-				+0.6
1,462,413	+				-1.4
1,462,431	+				-2.1
1,462,447	-				-1.2
1,462,451	-				-1.8
1,462,451	-				+0.2
1,462,454	-				-1.5
1,462,454	-				-2.9
1,462,455	+				-2.2
1,462,499	+		MMJJ_RS07975	0.14	-3.1
1,462,510	-		MMJJ_RS07975	0.15	-3.7
1,462,545	-		MMJJ_RS07975	0.20	-2.4
1,462,572	+		MMJJ_RS07975	0.23	-0.9
1,462,603	-		MMJJ_RS07975	0.27	-2.1
1,462,604	+		MMJJ_RS07975	0.27	+0.2
1,462,651	-		MMJJ_RS07975	0.33	-0.8
1,462,652	+		MMJJ_RS07975	0.34	-2.5
1,462,680	-		MMJJ_RS07975	0.37	+0.2
1,462,681	+		MMJJ_RS07975	0.37	-0.6
1,462,754	+		MMJJ_RS07975	0.47	-2.9
1,462,764	+		MMJJ_RS07975	0.48	-1.2
1,462,784	-		MMJJ_RS07975	0.51	-1.5
1,462,786	-		MMJJ_RS07975	0.51	-4.0
1,462,821	-		MMJJ_RS07975	0.55	-1.3
1,462,821	-		MMJJ_RS07975	0.55	-3.4
1,462,846	-		MMJJ_RS07975	0.59	-2.9
1,463,059	-		MMJJ_RS07975	0.86	-1.3
1,463,060	+		MMJJ_RS07975	0.86	-2.4
1,463,060	+		MMJJ_RS07975	0.86	-0.3
1,463,060	+		MMJJ_RS07975	0.86	-2.9
1,463,234	-				-1.3
1,463,352	-		MMJJ_RS07980	0.19	-0.5
1,463,353	+		MMJJ_RS07980	0.19	-2.0
1,463,356	-		MMJJ_RS07980	0.20	+1.2
1,463,392	-		MMJJ_RS07980	0.23	-1.1
1,463,393	+		MMJJ_RS07980	0.23	-1.1
1,463,394	-		MMJJ_RS07980	0.23	-1.8
1,463,394	-		MMJJ_RS07980	0.23	+0.2
1,463,394	-		MMJJ_RS07980	0.23	-2.0
1,463,395	+		MMJJ_RS07980	0.23	-0.4
1,463,407	-		MMJJ_RS07980	0.25	-1.4
1,463,407	-		MMJJ_RS07980	0.25	-0.1
1,463,413	+		MMJJ_RS07980	0.25	-2.5
1,463,443	-		MMJJ_RS07980	0.28	-0.6
1,463,446	-		MMJJ_RS07980	0.29	+1.2
1,463,452	-		MMJJ_RS07980	0.29	-2.1
1,463,453	+		MMJJ_RS07980	0.29	-2.3
1,463,483	+		MMJJ_RS07980	0.32	-3.5
1,463,491	+		MMJJ_RS07980	0.33	-2.2
1,463,514	-		MMJJ_RS07980	0.36	-0.6
1,463,514	-				+1.2
1,463,515	+		MMJJ_RS07980	0.36	-0.4
1,463,613	-		MMJJ_RS07980	0.46	-1.7
1,463,619	-		MMJJ_RS07980	0.46	-2.0
1,463,933	+		MMJJ_RS07980	0.78	-0.4
1,463,969	+		MMJJ_RS07980	0.82	-0.8
1,463,991	-		MMJJ_RS07980	0.84	-2.4
1,463,991	-		MMJJ_RS07980	0.84	-1.1
1,463,998	+		MMJJ_RS07980	0.85	-4.0
1,464,013	-		MMJJ_RS07980	0.86	-0.8
1,464,014	+		MMJJ_RS07980	0.86	-1.8
1,464,020	-		MMJJ_RS07980	0.87	+0.2
1,464,020	-		MMJJ_RS07980	0.87	-0.0
1,464,021	+		MMJJ_RS07980	0.87	-0.8
1,464,025	-		MMJJ_RS07980	0.88	-0.5
1,464,025	-		MMJJ_RS07980	0.88	-2.2
1,464,026	+		MMJJ_RS07980	0.88	+0.5
1,464,027	-		MMJJ_RS07980	0.88	-1.7
1,464,027	-		MMJJ_RS07980	0.88	-0.8
1,464,027	-		MMJJ_RS07980	0.88	-1.4
1,464,027	-		MMJJ_RS07980	0.88	-1.5
1,464,028	+		MMJJ_RS07980	0.88	-1.0
1,464,028	+		MMJJ_RS07980	0.88	-1.1
1,464,028	+		MMJJ_RS07980	0.88	-0.4
1,464,043	-		MMJJ_RS07980	0.89	-0.3
1,464,067	-				-0.8