Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS07950

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,457,655	-		MMJJ_RS07945	0.12	-1.1
1,457,655	-				+1.2
1,457,660	+		MMJJ_RS07945	0.12	-0.4
1,457,682	-				-0.4
1,457,686	-		MMJJ_RS07945	0.15	+0.8
1,458,002	-		MMJJ_RS07945	0.45	+1.2
1,458,016	-		MMJJ_RS07945	0.46	+1.2
1,458,053	+				-1.1
1,458,122	+		MMJJ_RS07945	0.56	+0.2
1,458,395	+				-0.4
1,458,433	-		MMJJ_RS07945	0.85	-1.9
1,458,603	+				+1.2
1,458,789	+		MMJJ_RS07950	0.40	-1.6
1,458,790	-		MMJJ_RS07950	0.40	-1.4
1,458,791	+				+1.2
1,458,848	+		MMJJ_RS07950	0.53	-2.1
1,458,848	+		MMJJ_RS07950	0.53	-1.8
1,458,848	+		MMJJ_RS07950	0.53	+0.2
1,458,881	-		MMJJ_RS07950	0.60	+0.2
1,458,881	-		MMJJ_RS07950	0.60	-0.8
1,459,043	-				-0.6
1,459,043	-				-0.8
1,459,045	-				-0.4
1,459,046	+				+1.2
1,459,046	+				-1.6
1,459,046	+				-0.8
1,459,046	+				-0.4
1,459,080	+				+1.2
1,459,080	+				+1.2
1,459,081	-				-1.4
1,459,088	-				+0.2
1,459,089	+				-1.4
1,459,101	-				-2.1
1,459,101	-				+0.2
1,459,103	-				-0.4
1,459,104	+				+0.2
1,459,104	+				+0.2
1,459,105	-				-2.2
1,459,105	-				-3.1
1,459,105	-				-1.5
1,459,105	-				-3.6
1,459,105	-				-2.8
1,459,105	-				-2.2
1,459,105	-				-1.9
1,459,105	-				+1.2
1,459,106	+				-2.6
1,459,106	+				-3.4
1,459,106	+				-0.4
1,459,106	+				-1.6
1,459,107	-				-1.3
1,459,107	-				+0.1
1,459,107	-				-0.9
1,459,108	+				-3.5
1,459,108	+				-1.0
1,459,108	+				-3.5
1,459,108	+				+0.7
1,459,136	-				-1.1
1,459,139	+				-1.6
1,459,139	+				-0.8
1,459,139	+				-1.6
1,459,139	+				-2.3
1,459,140	-				+2.0
1,459,141	+				-2.1
1,459,141	+				-2.3
1,459,187	-				-1.4
1,459,240	-				-0.1
1,459,339	+		MMJJ_RS07955	0.13	-2.6
1,459,427	-		MMJJ_RS07955	0.27	-2.2
1,459,428	+		MMJJ_RS07955	0.27	-1.2
1,459,428	+		MMJJ_RS07955	0.27	-2.4
1,459,428	+		MMJJ_RS07955	0.27	-1.7
1,459,428	+		MMJJ_RS07955	0.27	-1.5
1,459,428	+		MMJJ_RS07955	0.27	-2.1
1,459,464	-		MMJJ_RS07955	0.33	-0.4
1,459,464	-		MMJJ_RS07955	0.33	-2.7
1,459,465	+		MMJJ_RS07955	0.33	-2.6
1,459,465	+		MMJJ_RS07955	0.33	+0.2
1,459,537	+		MMJJ_RS07955	0.45	-3.8
1,459,537	+		MMJJ_RS07955	0.45	-3.1
1,459,565	-		MMJJ_RS07955	0.49	-0.8
1,459,565	-		MMJJ_RS07955	0.49	-0.8
1,459,587	-		MMJJ_RS07955	0.53	-1.6
1,459,619	+		MMJJ_RS07955	0.58	+1.5
1,459,623	-		MMJJ_RS07955	0.59	-1.8
1,459,624	+		MMJJ_RS07955	0.59	-3.8
1,459,624	+		MMJJ_RS07955	0.59	-3.6
1,459,626	-		MMJJ_RS07955	0.59	-1.6
1,459,627	+		MMJJ_RS07955	0.60	-2.5
1,459,627	+		MMJJ_RS07955	0.60	-0.2
1,459,627	+		MMJJ_RS07955	0.60	-2.9
1,459,654	+		MMJJ_RS07955	0.64	-3.2
1,459,661	-		MMJJ_RS07955	0.65	-3.2
1,459,774	+		MMJJ_RS07955	0.83	-3.2
1,459,783	+		MMJJ_RS07955	0.85	-1.8
1,459,802	+		MMJJ_RS07955	0.88	-0.5
1,459,802	+		MMJJ_RS07955	0.88	-2.2
1,459,802	+		MMJJ_RS07955	0.88	-3.0
1,459,808	-		MMJJ_RS07955	0.89	-0.4
1,459,809	+		MMJJ_RS07955	0.89	-2.7
1,459,809	+		MMJJ_RS07955	0.89	+2.2
1,459,936	+				-1.1