Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS07765

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,423,318	-				-2.4
1,423,367	-				+0.4
1,423,379	+				-3.1
1,423,381	+				+4.1
1,423,430	+				-1.1
1,423,444	-		MMJJ_RS07760	0.12	+0.6
1,423,446	-		MMJJ_RS07760	0.12	+3.4
1,423,459	-		MMJJ_RS07760	0.15	+1.3
1,423,514	-		MMJJ_RS07760	0.25	+3.5
1,423,514	-		MMJJ_RS07760	0.25	-2.1
1,423,514	-		MMJJ_RS07760	0.25	+1.6
1,423,566	+		MMJJ_RS07760	0.36	-1.0
1,423,570	+		MMJJ_RS07760	0.36	+0.4
1,423,578	+		MMJJ_RS07760	0.38	-1.5
1,423,579	-		MMJJ_RS07760	0.38	-0.7
1,423,580	+		MMJJ_RS07760	0.38	+1.4
1,423,615	-		MMJJ_RS07760	0.45	-0.8
1,423,620	-		MMJJ_RS07760	0.46	+1.3
1,423,621	+		MMJJ_RS07760	0.47	-0.1
1,423,635	-		MMJJ_RS07760	0.49	-2.4
1,423,680	+		MMJJ_RS07760	0.58	-2.3
1,423,731	-		MMJJ_RS07760	0.68	+2.3
1,423,749	+		MMJJ_RS07760	0.72	-2.5
1,423,760	-		MMJJ_RS07760	0.74	+0.3
1,423,763	-		MMJJ_RS07760	0.75	+1.9
1,423,781	+		MMJJ_RS07760	0.78	-0.8
1,423,781	+		MMJJ_RS07760	0.78	-1.0
1,423,793	-		MMJJ_RS07760	0.80	-1.3
1,423,835	-		MMJJ_RS07760	0.89	-2.3
1,423,836	+		MMJJ_RS07760	0.89	-0.9
1,423,867	-				-2.4
1,423,882	-				-1.1
1,423,883	+				-1.4
1,423,886	+				+2.1
1,423,886	+				+3.7
1,423,895	+				+0.6
1,423,914	+				-2.1
1,423,925	-				-1.3
1,423,926	+				-0.6
1,423,926	+				-1.5
1,423,931	-				-3.0
1,423,931	-				-1.8
1,423,931	-				+1.2
1,423,932	+				-2.2
1,423,932	+				-3.4
1,423,932	+				+0.4
1,423,932	+				+1.1
1,423,932	+				+1.8
1,423,932	+				+0.6
1,423,932	+				+2.0
1,423,932	+				-2.7
1,423,934	+				-2.8
1,423,934	+				-2.6
1,423,935	-				-0.4
1,423,935	-				-2.3
1,423,939	-				-2.1
1,423,973	+				-0.7
1,424,004	-		MMJJ_RS07765	0.12	+1.2
1,424,036	-		MMJJ_RS07765	0.22	+1.7
1,424,037	+		MMJJ_RS07765	0.22	+3.2
1,424,044	+		MMJJ_RS07765	0.24	-0.9
1,424,140	-		MMJJ_RS07765	0.52	-0.8
1,424,145	-		MMJJ_RS07765	0.54	+2.1
1,424,146	+		MMJJ_RS07765	0.54	-1.1
1,424,146	+		MMJJ_RS07765	0.54	+0.7
1,424,160	+		MMJJ_RS07765	0.58	+1.3
1,424,166	+		MMJJ_RS07765	0.60	-1.3
1,424,316	-				-0.4
1,424,356	-				-0.8
1,424,473	+				+1.3
1,424,494	-				-1.5
1,424,496	-				-1.0
1,424,497	+				-1.3
1,424,497	+				+1.3
1,424,503	-				-1.0
1,424,525	-				+0.8
1,424,525	-				+0.3
1,424,525	-				+1.9
1,424,525	-				+1.3
1,424,529	+				+1.8
1,424,529	+				-3.0
1,424,534	-				-0.3
1,424,562	+				+2.0
1,424,595	+		MMJJ_RS07775	0.13	-3.2
1,424,597	-		MMJJ_RS07775	0.13	-1.3
1,424,602	-		MMJJ_RS07775	0.15	+2.9
1,424,603	+		MMJJ_RS07775	0.15	+0.7
1,424,649	-		MMJJ_RS07775	0.27	+1.5
1,424,649	-		MMJJ_RS07775	0.27	-0.3
1,424,650	+		MMJJ_RS07775	0.28	-0.8
1,424,656	+		MMJJ_RS07775	0.29	+3.8
1,424,693	-		MMJJ_RS07775	0.39	+1.3
1,424,694	+		MMJJ_RS07775	0.40	+2.6
1,424,696	-		MMJJ_RS07775	0.40	+1.3
1,424,698	-				-0.3
1,424,699	+		MMJJ_RS07775	0.41	+4.8
1,424,699	+		MMJJ_RS07775	0.41	-0.9
1,424,699	+		MMJJ_RS07775	0.41	+0.6
1,424,709	+		MMJJ_RS07775	0.44	+0.5
1,424,772	-		MMJJ_RS07775	0.61	+1.2
1,424,792	+		MMJJ_RS07775	0.66	+3.3
1,424,802	-		MMJJ_RS07775	0.69	+0.3
1,424,811	+		MMJJ_RS07775	0.71	+1.3
1,424,821	-		MMJJ_RS07775	0.74	+2.5
1,424,880	+				-2.3
1,424,972	+		MMJJ_RS07780	0.15	-1.2
1,424,972	+		MMJJ_RS07780	0.15	+0.8
1,424,972	+		MMJJ_RS07780	0.15	+0.4
1,424,988	-		MMJJ_RS07780	0.20	-0.5
1,424,989	+		MMJJ_RS07780	0.21	+1.3
1,425,086	+		MMJJ_RS07780	0.50	+1.3
1,425,094	-		MMJJ_RS07780	0.52	+0.3
1,425,096	-		MMJJ_RS07780	0.53	-1.0
1,425,097	+		MMJJ_RS07780	0.53	+1.9
1,425,164	+		MMJJ_RS07780	0.74	-0.5
1,425,165	-		MMJJ_RS07780	0.74	-0.9
1,425,166	+		MMJJ_RS07780	0.74	-0.5
1,425,166	+		MMJJ_RS07780	0.74	-2.6
1,425,166	+		MMJJ_RS07780	0.74	+2.5
1,425,205	-		MMJJ_RS07780	0.86	-0.2
1,425,205	-		MMJJ_RS07780	0.86	+0.5
1,425,205	-		MMJJ_RS07780	0.86	+4.1
1,425,206	+		MMJJ_RS07780	0.86	-0.9
1,425,206	+		MMJJ_RS07780	0.86	+0.9
1,425,207	-		MMJJ_RS07780	0.87	-2.2
1,425,207	-		MMJJ_RS07780	0.87	-1.3
1,425,229	+				-0.3
1,425,229	+				-0.9
1,425,229	+				-2.6
1,425,287	+				-1.0