Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS07705

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,413,392	+		MMJJ_RS07700	0.26	-0.7
1,413,404	-		MMJJ_RS07700	0.27	-0.1
1,413,405	+		MMJJ_RS07700	0.27	+1.6
1,413,408	-		MMJJ_RS07700	0.27	+1.7
1,413,444	-		MMJJ_RS07700	0.30	+1.7
1,413,445	+		MMJJ_RS07700	0.30	-2.8
1,413,457	+		MMJJ_RS07700	0.31	-3.5
1,413,467	-		MMJJ_RS07700	0.32	+3.0
1,413,622	-		MMJJ_RS07700	0.44	+3.1
1,413,641	-		MMJJ_RS07700	0.46	+1.5
1,413,648	+		MMJJ_RS07700	0.46	-0.2
1,413,678	-		MMJJ_RS07700	0.49	+1.7
1,413,678	-		MMJJ_RS07700	0.49	-0.1
1,413,680	-		MMJJ_RS07700	0.49	+1.3
1,413,680	-		MMJJ_RS07700	0.49	-2.5
1,413,681	+		MMJJ_RS07700	0.49	-0.0
1,413,681	+		MMJJ_RS07700	0.49	+0.0
1,413,681	+		MMJJ_RS07700	0.49	-1.3
1,413,757	+		MMJJ_RS07700	0.55	+1.3
1,413,772	+		MMJJ_RS07700	0.57	-0.3
1,413,772	+		MMJJ_RS07700	0.57	+0.7
1,413,779	-		MMJJ_RS07700	0.57	+1.8
1,413,781	-		MMJJ_RS07700	0.57	-3.1
1,413,790	-		MMJJ_RS07700	0.58	-0.4
1,413,791	+				+1.3
1,413,843	+		MMJJ_RS07700	0.62	+2.7
1,413,847	-		MMJJ_RS07700	0.63	-0.4
1,413,848	+		MMJJ_RS07700	0.63	+3.4
1,413,872	+		MMJJ_RS07700	0.65	-2.0
1,413,918	-		MMJJ_RS07700	0.69	-1.3
1,414,043	-		MMJJ_RS07700	0.79	-2.2
1,414,043	-		MMJJ_RS07700	0.79	+2.6
1,414,051	-		MMJJ_RS07700	0.79	+0.3
1,414,059	-		MMJJ_RS07700	0.80	+0.3
1,414,059	-		MMJJ_RS07700	0.80	+0.9
1,414,100	-		MMJJ_RS07700	0.83	-0.9
1,414,103	-		MMJJ_RS07700	0.84	+0.7
1,414,103	-		MMJJ_RS07700	0.84	-0.2
1,414,104	+		MMJJ_RS07700	0.84	-2.5
1,414,104	+		MMJJ_RS07700	0.84	+3.5
1,414,111	+		MMJJ_RS07700	0.84	-0.2
1,414,117	-		MMJJ_RS07700	0.85	+0.5
1,414,125	-		MMJJ_RS07700	0.85	-0.1
1,414,125	-		MMJJ_RS07700	0.85	+2.4
1,414,126	+		MMJJ_RS07700	0.86	-3.5
1,414,134	-		MMJJ_RS07700	0.86	-2.1
1,414,135	+		MMJJ_RS07700	0.86	+0.3
1,414,141	+		MMJJ_RS07700	0.87	+0.4
1,414,141	+		MMJJ_RS07700	0.87	+0.1
1,414,150	-		MMJJ_RS07700	0.88	-2.3
1,414,150	-		MMJJ_RS07700	0.88	+3.7
1,414,150	-		MMJJ_RS07700	0.88	+1.7
1,414,150	-		MMJJ_RS07700	0.88	-0.1
1,414,151	+		MMJJ_RS07700	0.88	-0.7
1,414,151	+		MMJJ_RS07700	0.88	+1.5
1,414,216	-				+0.5
1,414,246	-				+3.3
1,414,247	+				+1.1
1,414,257	-				-1.9
1,414,291	-				-2.0
1,414,292	+				-0.3
1,414,292	+				+0.3
1,414,301	+				-0.2
1,414,301	+				-0.4
1,414,323	+				-2.2
1,414,349	+				-1.5
1,414,437	-		MMJJ_RS07705	0.17	+1.3
1,414,444	+		MMJJ_RS07705	0.18	-0.7
1,414,563	+		MMJJ_RS07705	0.35	-1.3
1,414,572	-		MMJJ_RS07705	0.37	-0.3
1,414,606	+		MMJJ_RS07705	0.41	-1.0
1,414,650	+		MMJJ_RS07705	0.48	-0.3
1,414,654	+		MMJJ_RS07705	0.48	+1.3
1,414,654	+		MMJJ_RS07705	0.48	-0.7
1,414,813	+		MMJJ_RS07705	0.71	-2.2
1,414,987	-				-2.0
1,414,987	-				-2.3
1,414,988	+				-1.6
1,414,988	+				+1.2
1,415,686	-				-0.7
1,415,706	-				+1.7
1,415,717	+				-1.2
1,415,717	+				-0.3
1,415,723	+				-2.4
1,415,952	-		MMJJ_RS07715	0.18	+0.3
1,415,953	+		MMJJ_RS07715	0.18	-1.5