Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS07590

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,388,577	-		MMJJ_RS07585	0.58	-0.9
1,388,630	-		MMJJ_RS07585	0.60	-1.9
1,388,631	+		MMJJ_RS07585	0.61	+1.3
1,388,650	+		MMJJ_RS07585	0.61	+1.3
1,388,677	+		MMJJ_RS07585	0.63	-1.5
1,388,721	-		MMJJ_RS07585	0.64	-1.3
1,388,722	+		MMJJ_RS07585	0.65	-2.3
1,388,879	-		MMJJ_RS07585	0.71	-0.6
1,388,879	-		MMJJ_RS07585	0.71	-2.8
1,388,879	-		MMJJ_RS07585	0.71	-2.2
1,388,879	-		MMJJ_RS07585	0.71	-1.8
1,388,880	+		MMJJ_RS07585	0.71	-1.3
1,388,880	+		MMJJ_RS07585	0.71	-0.7
1,388,880	+		MMJJ_RS07585	0.71	+3.5
1,388,880	+		MMJJ_RS07585	0.71	+1.0
1,388,941	+		MMJJ_RS07585	0.74	-1.9
1,388,943	+		MMJJ_RS07585	0.74	-1.0
1,389,027	-		MMJJ_RS07585	0.78	-1.9
1,389,189	-		MMJJ_RS07585	0.85	+1.9
1,389,203	-		MMJJ_RS07585	0.86	-0.7
1,389,203	-		MMJJ_RS07585	0.86	-1.3
1,389,327	-				+0.3
1,389,368	+				+1.8
1,389,372	-				-1.7
1,389,379	-				-0.4
1,389,380	+				+0.4
1,389,381	-				-2.2
1,389,381	-				-0.7
1,389,382	+				-2.5
1,389,382	+				+0.6
1,389,382	+				-1.3
1,389,384	-				+0.3
1,389,486	-				-0.7
1,389,535	+				-1.8
1,389,633	+				+4.4
1,389,661	-				-1.1
1,389,683	-		MMJJ_RS07590	0.12	-0.3
1,389,741	-		MMJJ_RS07590	0.18	-1.9
1,389,769	+		MMJJ_RS07590	0.20	+0.9
1,389,882	-		MMJJ_RS07590	0.32	-1.3
1,389,882	-		MMJJ_RS07590	0.32	-2.4
1,389,882	-		MMJJ_RS07590	0.32	+0.3
1,389,927	-		MMJJ_RS07590	0.37	-0.0
1,389,932	-		MMJJ_RS07590	0.37	+3.0
1,389,964	-		MMJJ_RS07590	0.40	-2.4
1,389,969	+		MMJJ_RS07590	0.41	+1.3
1,389,969	+		MMJJ_RS07590	0.41	-1.1
1,389,969	+		MMJJ_RS07590	0.41	-3.5
1,390,007	-		MMJJ_RS07590	0.45	-1.0
1,390,007	-		MMJJ_RS07590	0.45	-2.2
1,390,009	-		MMJJ_RS07590	0.45	+0.4
1,390,010	+		MMJJ_RS07590	0.45	+0.2
1,390,010	+		MMJJ_RS07590	0.45	-1.6
1,390,079	+		MMJJ_RS07590	0.52	-0.3
1,390,079	+		MMJJ_RS07590	0.52	-1.7
1,390,079	+		MMJJ_RS07590	0.52	-2.6
1,390,117	+		MMJJ_RS07590	0.56	-1.1
1,390,194	+		MMJJ_RS07590	0.64	-1.5
1,390,243	+		MMJJ_RS07590	0.69	-2.3
1,390,349	-		MMJJ_RS07590	0.80	-0.3
1,390,357	-		MMJJ_RS07590	0.81	-0.6
1,390,358	+		MMJJ_RS07590	0.81	-2.6
1,390,375	-		MMJJ_RS07590	0.83	+0.8
1,390,375	-		MMJJ_RS07590	0.83	-1.2
1,390,375	-		MMJJ_RS07590	0.83	-1.5
1,390,375	-		MMJJ_RS07590	0.83	-2.0
1,390,375	-		MMJJ_RS07590	0.83	-1.7
1,390,375	-		MMJJ_RS07590	0.83	-1.7
1,390,376	+		MMJJ_RS07590	0.83	-0.3
1,390,376	+		MMJJ_RS07590	0.83	-2.7
1,390,376	+		MMJJ_RS07590	0.83	+1.0
1,390,378	-		MMJJ_RS07590	0.83	-1.6
1,390,378	-		MMJJ_RS07590	0.83	-2.2
1,390,378	-		MMJJ_RS07590	0.83	-0.2
1,390,379	+		MMJJ_RS07590	0.83	-1.7
1,390,382	-		MMJJ_RS07590	0.83	-1.0
1,390,382	-		MMJJ_RS07590	0.83	+2.6
1,390,382	-		MMJJ_RS07590	0.83	-0.7
1,390,383	+		MMJJ_RS07590	0.83	-2.6
1,390,383	+		MMJJ_RS07590	0.83	-2.8
1,390,386	-		MMJJ_RS07590	0.84	-1.0
1,390,387	+		MMJJ_RS07590	0.84	-1.4
1,390,387	+		MMJJ_RS07590	0.84	-2.7
1,390,387	+		MMJJ_RS07590	0.84	-2.7
1,390,391	-		MMJJ_RS07590	0.84	-2.6
1,390,392	+		MMJJ_RS07590	0.84	-0.3
1,390,393	-		MMJJ_RS07590	0.84	-3.6
1,390,400	+		MMJJ_RS07590	0.85	-2.6
1,390,478	-				-0.8
1,390,548	-				-0.4
1,390,553	+				+0.6
1,390,621	+		MMJJ_RS07595	0.11	+0.9
1,390,656	-		MMJJ_RS07595	0.16	+0.3
1,390,732	+		MMJJ_RS07595	0.29	+1.1
1,390,834	-		MMJJ_RS07595	0.45	-1.1
1,390,835	+		MMJJ_RS07595	0.45	+0.3
1,390,836	-		MMJJ_RS07595	0.45	+2.7
1,390,876	-		MMJJ_RS07595	0.52	-1.1
1,390,877	+		MMJJ_RS07595	0.52	-0.1
1,390,877	+		MMJJ_RS07595	0.52	-1.2
1,390,937	-		MMJJ_RS07595	0.61	-1.5
1,391,026	-		MMJJ_RS07595	0.75	+3.3
1,391,026	-		MMJJ_RS07595	0.75	+0.2
1,391,055	+		MMJJ_RS07595	0.80	-0.7
1,391,070	-		MMJJ_RS07595	0.82	-2.3
1,391,075	-		MMJJ_RS07595	0.83	-0.3
1,391,075	-		MMJJ_RS07595	0.83	-1.0
1,391,099	+		MMJJ_RS07595	0.87	-2.7
1,391,125	+				-0.3
1,391,146	+				-3.6
1,391,161	+				-1.4
1,391,171	+				-0.0
1,391,171	+				+0.3
1,391,182	-				-0.3
1,391,316	-		MMJJ_RS07600	0.74	-0.3
1,391,360	+				-1.0
1,391,390	+				-0.7
1,391,409	+				-0.7
1,391,442	-				-1.0