Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS07585

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,386,670	-		MMJJ_RS07580	0.51	+0.3
1,386,942	-				-2.3
1,386,946	-				-0.5
1,386,947	+				-1.8
1,386,966	+				-1.0
1,387,143	-				-2.5
1,387,154	-				-0.7
1,387,154	-				-0.0
1,387,155	+				+1.5
1,387,158	-				+0.0
1,387,158	-				+1.9
1,387,158	-				-3.9
1,387,159	+				+0.3
1,387,160	-				-0.9
1,387,160	-				-1.3
1,387,160	-				-2.2
1,387,161	+				-0.8
1,387,161	+				+0.1
1,387,161	+				-1.6
1,387,161	+				+1.4
1,387,161	+				+0.9
1,387,161	+				+0.3
1,387,162	-				-2.5
1,387,163	+				-3.3
1,387,163	+				-1.3
1,387,164	-				-1.7
1,387,164	-				+4.8
1,387,164	-				-0.3
1,387,165	+				-1.2
1,387,165	+				-0.9
1,387,165	+				-1.3
1,387,169	+				-1.2
1,387,199	+				+1.8
1,387,221	+				+4.0
1,387,222	-				-0.4
1,387,222	-				-1.8
1,387,582	+		MMJJ_RS07585	0.15	+0.3
1,387,841	-		MMJJ_RS07585	0.26	-2.4
1,387,842	+		MMJJ_RS07585	0.26	-1.4
1,387,842	+				-0.3
1,387,842	+		MMJJ_RS07585	0.26	-1.0
1,387,912	+		MMJJ_RS07585	0.29	-1.5
1,387,948	-		MMJJ_RS07585	0.31	-0.3
1,388,001	-		MMJJ_RS07585	0.33	-2.3
1,388,001	-		MMJJ_RS07585	0.33	-0.7
1,388,002	+		MMJJ_RS07585	0.33	-0.5
1,388,005	-		MMJJ_RS07585	0.33	-1.9
1,388,006	+		MMJJ_RS07585	0.33	+1.9
1,388,006	+		MMJJ_RS07585	0.33	-2.0
1,388,008	-		MMJJ_RS07585	0.33	-1.7
1,388,009	+		MMJJ_RS07585	0.33	+1.3
1,388,011	-		MMJJ_RS07585	0.33	-1.0
1,388,062	-		MMJJ_RS07585	0.36	-1.1
1,388,062	-		MMJJ_RS07585	0.36	+1.3
1,388,103	-				-0.3
1,388,103	-		MMJJ_RS07585	0.37	-1.5
1,388,104	+		MMJJ_RS07585	0.37	-0.3
1,388,116	+		MMJJ_RS07585	0.38	-1.5
1,388,122	+		MMJJ_RS07585	0.38	-1.3
1,388,143	+		MMJJ_RS07585	0.39	-0.5
1,388,160	-		MMJJ_RS07585	0.40	-1.3
1,388,268	-		MMJJ_RS07585	0.45	+1.3
1,388,406	-		MMJJ_RS07585	0.51	-1.3
1,388,413	-		MMJJ_RS07585	0.51	-2.2
1,388,457	+		MMJJ_RS07585	0.53	-3.0
1,388,542	+		MMJJ_RS07585	0.57	-2.9
1,388,577	-		MMJJ_RS07585	0.58	-0.9
1,388,630	-		MMJJ_RS07585	0.60	-1.9
1,388,631	+		MMJJ_RS07585	0.61	+1.3
1,388,650	+		MMJJ_RS07585	0.61	+1.3
1,388,677	+		MMJJ_RS07585	0.63	-1.5
1,388,721	-		MMJJ_RS07585	0.64	-1.3
1,388,722	+		MMJJ_RS07585	0.65	-2.3
1,388,879	-		MMJJ_RS07585	0.71	-0.6
1,388,879	-		MMJJ_RS07585	0.71	-2.8
1,388,879	-		MMJJ_RS07585	0.71	-2.2
1,388,879	-		MMJJ_RS07585	0.71	-1.8
1,388,880	+		MMJJ_RS07585	0.71	-1.3
1,388,880	+		MMJJ_RS07585	0.71	-0.7
1,388,880	+		MMJJ_RS07585	0.71	+3.5
1,388,880	+		MMJJ_RS07585	0.71	+1.0
1,388,941	+		MMJJ_RS07585	0.74	-1.9
1,388,943	+		MMJJ_RS07585	0.74	-1.0
1,389,027	-		MMJJ_RS07585	0.78	-1.9
1,389,189	-		MMJJ_RS07585	0.85	+1.9
1,389,203	-		MMJJ_RS07585	0.86	-0.7
1,389,203	-		MMJJ_RS07585	0.86	-1.3
1,389,327	-				+0.3
1,389,368	+				+1.8
1,389,372	-				-1.7
1,389,379	-				-0.4
1,389,380	+				+0.4
1,389,381	-				-2.2
1,389,381	-				-0.7
1,389,382	+				-2.5
1,389,382	+				+0.6
1,389,382	+				-1.3
1,389,384	-				+0.3
1,389,486	-				-0.7
1,389,535	+				-1.8
1,389,633	+				+4.4
1,389,661	-				-1.1
1,389,683	-		MMJJ_RS07590	0.12	-0.3
1,389,741	-		MMJJ_RS07590	0.18	-1.9
1,389,769	+		MMJJ_RS07590	0.20	+0.9
1,389,882	-		MMJJ_RS07590	0.32	-1.3
1,389,882	-		MMJJ_RS07590	0.32	-2.4
1,389,882	-		MMJJ_RS07590	0.32	+0.3
1,389,927	-		MMJJ_RS07590	0.37	-0.0
1,389,932	-		MMJJ_RS07590	0.37	+3.0
1,389,964	-		MMJJ_RS07590	0.40	-2.4
1,389,969	+		MMJJ_RS07590	0.41	+1.3
1,389,969	+		MMJJ_RS07590	0.41	-1.1
1,389,969	+		MMJJ_RS07590	0.41	-3.5
1,390,007	-		MMJJ_RS07590	0.45	-1.0
1,390,007	-		MMJJ_RS07590	0.45	-2.2
1,390,009	-		MMJJ_RS07590	0.45	+0.4
1,390,010	+		MMJJ_RS07590	0.45	+0.2
1,390,010	+		MMJJ_RS07590	0.45	-1.6
1,390,079	+		MMJJ_RS07590	0.52	-0.3
1,390,079	+		MMJJ_RS07590	0.52	-1.7
1,390,079	+		MMJJ_RS07590	0.52	-2.6
1,390,117	+		MMJJ_RS07590	0.56	-1.1
1,390,194	+		MMJJ_RS07590	0.64	-1.5
1,390,243	+		MMJJ_RS07590	0.69	-2.3
1,390,349	-		MMJJ_RS07590	0.80	-0.3
1,390,357	-		MMJJ_RS07590	0.81	-0.6
1,390,358	+		MMJJ_RS07590	0.81	-2.6
1,390,375	-		MMJJ_RS07590	0.83	+0.8
1,390,375	-		MMJJ_RS07590	0.83	-1.2
1,390,375	-		MMJJ_RS07590	0.83	-1.5
1,390,375	-		MMJJ_RS07590	0.83	-2.0
1,390,375	-		MMJJ_RS07590	0.83	-1.7
1,390,375	-		MMJJ_RS07590	0.83	-1.7
1,390,376	+		MMJJ_RS07590	0.83	-0.3
1,390,376	+		MMJJ_RS07590	0.83	-2.7
1,390,376	+		MMJJ_RS07590	0.83	+1.0
1,390,378	-		MMJJ_RS07590	0.83	-1.6
1,390,378	-		MMJJ_RS07590	0.83	-2.2
1,390,378	-		MMJJ_RS07590	0.83	-0.2
1,390,379	+		MMJJ_RS07590	0.83	-1.7
1,390,382	-		MMJJ_RS07590	0.83	-1.0
1,390,382	-		MMJJ_RS07590	0.83	+2.6
1,390,382	-		MMJJ_RS07590	0.83	-0.7
1,390,383	+		MMJJ_RS07590	0.83	-2.6
1,390,383	+		MMJJ_RS07590	0.83	-2.8
1,390,386	-		MMJJ_RS07590	0.84	-1.0
1,390,387	+		MMJJ_RS07590	0.84	-1.4
1,390,387	+		MMJJ_RS07590	0.84	-2.7
1,390,387	+		MMJJ_RS07590	0.84	-2.7
1,390,391	-		MMJJ_RS07590	0.84	-2.6
1,390,392	+		MMJJ_RS07590	0.84	-0.3
1,390,393	-		MMJJ_RS07590	0.84	-3.6
1,390,400	+		MMJJ_RS07590	0.85	-2.6
1,390,478	-				-0.8