Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS07440

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,365,986	+		MMJJ_RS07435	0.67	+0.1
1,365,990	+		MMJJ_RS07435	0.67	-2.5
1,366,030	-		MMJJ_RS07435	0.69	+2.0
1,366,030	-		MMJJ_RS07435	0.69	+1.8
1,366,062	+		MMJJ_RS07435	0.70	+6.5
1,366,133	-		MMJJ_RS07435	0.72	-0.6
1,366,157	-		MMJJ_RS07435	0.73	-1.4
1,366,217	+		MMJJ_RS07435	0.75	-0.7
1,366,217	-		MMJJ_RS07435	0.75	+0.5
1,366,310	-		MMJJ_RS07435	0.78	-0.7
1,366,374	+		MMJJ_RS07435	0.80	-0.6
1,366,413	+		MMJJ_RS07435	0.81	-0.6
1,366,413	+		MMJJ_RS07435	0.81	+3.3
1,366,446	-		MMJJ_RS07435	0.83	+3.1
1,366,457	-		MMJJ_RS07435	0.83	-2.4
1,366,458	+		MMJJ_RS07435	0.83	+3.2
1,366,528	-		MMJJ_RS07435	0.85	-1.3
1,366,528	-		MMJJ_RS07435	0.85	+2.9
1,366,576	-		MMJJ_RS07435	0.87	+1.7
1,366,576	-		MMJJ_RS07435	0.87	-0.2
1,366,578	-		MMJJ_RS07435	0.87	+0.3
1,366,578	-		MMJJ_RS07435	0.87	+0.6
1,366,578	-		MMJJ_RS07435	0.87	-0.7
1,366,579	+		MMJJ_RS07435	0.87	-0.8
1,366,580	-		MMJJ_RS07435	0.87	+3.1
1,366,595	-		MMJJ_RS07435	0.88	-1.5
1,366,678	+				-1.7
1,366,725	-				+4.2
1,366,725	-				+2.4
1,366,726	+				+2.8
1,366,729	-				+2.0
1,366,730	+				+1.1
1,366,985	+				+2.3
1,367,049	+				+1.9
1,367,071	+				-0.5
1,367,091	+				+3.0
1,367,093	-		MMJJ_RS07440	0.10	+2.3
1,367,245	+		MMJJ_RS07440	0.24	+1.3
1,367,288	-		MMJJ_RS07440	0.28	-0.9
1,367,289	+		MMJJ_RS07440	0.28	+2.7
1,367,289	+		MMJJ_RS07440	0.28	+2.1
1,367,375	-		MMJJ_RS07440	0.35	-0.8
1,367,376	+		MMJJ_RS07440	0.35	-1.0
1,367,447	-		MMJJ_RS07440	0.42	+0.5
1,367,477	+		MMJJ_RS07440	0.44	-0.1
1,367,512	+		MMJJ_RS07440	0.48	-1.9
1,367,544	+		MMJJ_RS07440	0.50	-0.3
1,367,545	-		MMJJ_RS07440	0.50	-1.2
1,367,546	+		MMJJ_RS07440	0.51	-0.0
1,367,546	+		MMJJ_RS07440	0.51	+2.6
1,367,546	+		MMJJ_RS07440	0.51	+1.2
1,367,546	+		MMJJ_RS07440	0.51	+2.3
1,367,546	+		MMJJ_RS07440	0.51	+0.3
1,367,550	+		MMJJ_RS07440	0.51	-2.4
1,367,622	-		MMJJ_RS07440	0.57	+3.9
1,367,622	-		MMJJ_RS07440	0.57	+1.4
1,367,680	-		MMJJ_RS07440	0.63	+1.2
1,367,711	+		MMJJ_RS07440	0.65	+2.0
1,367,711	+		MMJJ_RS07440	0.65	-0.7
1,367,772	-		MMJJ_RS07440	0.71	+2.7
1,367,776	+		MMJJ_RS07440	0.71	+3.1
1,367,916	-		MMJJ_RS07440	0.84	+2.5
1,367,949	-		MMJJ_RS07440	0.87	+0.3
1,367,950	+		MMJJ_RS07440	0.87	+1.1
1,367,950	+		MMJJ_RS07440	0.87	+1.1
1,367,982	-		MMJJ_RS07440	0.90	-0.9
1,368,099	+				+0.0
1,368,119	-				+0.2
1,368,120	+				+1.9
1,368,120	+				-0.5
1,368,138	+				+2.1
1,368,145	+				-3.3
1,368,148	-				+2.5
1,368,148	-				-1.1
1,368,149	+				-0.6
1,368,157	+				+1.2
1,368,159	+				+1.4
1,368,161	-				+2.6
1,368,161	-				+1.6
1,368,162	+				-2.1
1,368,162	+				-3.6
1,368,167	+				+1.0
1,368,182	+				-0.7
1,368,186	-				+1.7
1,368,283	+		MMJJ_RS07445	0.10	+0.6
1,368,317	-		MMJJ_RS07445	0.15	+0.7
1,368,318	+		MMJJ_RS07445	0.15	-3.0
1,368,336	-		MMJJ_RS07445	0.17	+1.9
1,368,336	-		MMJJ_RS07445	0.17	-3.3
1,368,339	+		MMJJ_RS07445	0.17	+5.6
1,368,339	+		MMJJ_RS07445	0.17	-1.1
1,368,339	+		MMJJ_RS07445	0.17	-3.4
1,368,375	+		MMJJ_RS07445	0.22	-1.6
1,368,424	-		MMJJ_RS07445	0.28	+1.1
1,368,424	-		MMJJ_RS07445	0.28	+0.4
1,368,425	+		MMJJ_RS07445	0.28	-2.4
1,368,425	+		MMJJ_RS07445	0.28	+0.0
1,368,530	-		MMJJ_RS07445	0.41	+1.8
1,368,531	+		MMJJ_RS07445	0.42	-0.6
1,368,531	+		MMJJ_RS07445	0.42	+0.3
1,368,561	-		MMJJ_RS07445	0.45	+1.0
1,368,584	-		MMJJ_RS07445	0.48	+0.3
1,368,585	+		MMJJ_RS07445	0.48	-1.5
1,368,596	-		MMJJ_RS07445	0.50	-1.8
1,368,597	+		MMJJ_RS07445	0.50	+2.0
1,368,603	+		MMJJ_RS07445	0.51	-1.0
1,368,613	-		MMJJ_RS07445	0.52	-0.5
1,368,613	-		MMJJ_RS07445	0.52	-0.3
1,368,613	-		MMJJ_RS07445	0.52	+1.9
1,368,622	-		MMJJ_RS07445	0.53	-0.3
1,368,682	-		MMJJ_RS07445	0.61	+1.0
1,368,682	-		MMJJ_RS07445	0.61	-2.0
1,368,686	+		MMJJ_RS07445	0.61	+0.6
1,368,689	+		MMJJ_RS07445	0.61	-3.4
1,368,702	-		MMJJ_RS07445	0.63	-3.1
1,368,703	+		MMJJ_RS07445	0.63	-2.5
1,368,703	+		MMJJ_RS07445	0.63	-2.1
1,368,703	+		MMJJ_RS07445	0.63	-2.7
1,368,706	+		MMJJ_RS07445	0.64	-0.3
1,368,706	+		MMJJ_RS07445	0.64	+1.7
1,368,706	+		MMJJ_RS07445	0.64	+0.1
1,368,769	-		MMJJ_RS07445	0.71	-0.5
1,368,835	-		MMJJ_RS07445	0.80	+2.7
1,368,840	+		MMJJ_RS07445	0.80	-1.2
1,368,859	-		MMJJ_RS07445	0.83	+3.9
1,368,971	-				+1.9
1,368,974	-				-0.8
1,368,975	+				-2.5
1,368,976	-				-1.3
1,368,976	-				+0.7
1,368,976	-				+0.8
1,368,997	+				+0.1
1,368,997	+				-0.7
1,369,002	-				-1.9
1,369,002	-				-0.0
1,369,002	-				-1.3
1,369,002	-				-0.7
1,369,003	+				+1.5
1,369,003	+				+0.6
1,369,005	+				+0.3
1,369,005	+				-0.7
1,369,015	+				+0.5
1,369,016	-				-0.7
1,369,020	+				+0.1
1,369,024	-				+0.3
1,369,025	+				-1.0
1,369,025	+				-2.5
1,369,025	+				-1.5
1,369,025	+				-2.8
1,369,035	+		MMJJ_RS07450	0.11	-0.3
1,369,040	-		MMJJ_RS07450	0.14	+0.7
1,369,041	+		MMJJ_RS07450	0.14	+2.2
1,369,067	+		MMJJ_RS07450	0.28	-1.9
1,369,067	+		MMJJ_RS07450	0.28	+1.8