Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS07415

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,360,504	+		MMJJ_RS07405	0.49	-2.7
1,360,524	-		MMJJ_RS07405	0.59	-0.9
1,360,546	+		MMJJ_RS07405	0.70	+2.2
1,360,571	+		MMJJ_RS07405	0.82	+0.5
1,360,573	-		MMJJ_RS07405	0.83	+2.3
1,360,574	+		MMJJ_RS07405	0.84	-1.7
1,360,593	-				-0.4
1,360,604	-				-0.4
1,360,605	+				+3.2
1,360,613	-				+1.8
1,360,638	-				+1.8
1,360,638	-				-3.3
1,360,638	-				+2.6
1,360,638	-				-0.8
1,360,669	-				-0.6
1,360,669	-				-2.0
1,360,671	-				-1.7
1,360,671	-				-2.3
1,360,671	-				+0.0
1,360,671	-				-2.2
1,360,671	-				+0.4
1,360,671	-				+1.7
1,360,671	-				-1.0
1,360,671	-				+0.3
1,360,671	-				-2.1
1,360,672	+				-2.7
1,360,672	+				-1.2
1,360,672	+				+1.0
1,360,672	+				-1.5
1,360,672	+				-0.1
1,360,672	+				+1.0
1,360,672	+				-1.2
1,360,672	+				+1.2
1,360,673	-				-0.5
1,360,673	-				-1.2
1,360,673	-				-0.5
1,360,673	-				+5.5
1,360,673	-				+1.6
1,360,673	-				-0.4
1,360,673	-				+3.6
1,360,674	+				-1.3
1,360,674	+				-0.5
1,360,684	-				-2.6
1,360,685	+				+0.7
1,360,710	+				+0.6
1,360,715	-				+0.1
1,360,716	+				-0.7
1,360,724	+				-0.2
1,360,739	-				-1.7
1,360,739	-				-0.7
1,360,739	-				+1.3
1,361,007	-		MMJJ_RS07410	0.37	-2.0
1,361,052	-				-0.2
1,361,056	-		MMJJ_RS07410	0.44	+1.3
1,361,057	+				+1.3
1,361,059	+		MMJJ_RS07410	0.44	-0.2
1,361,062	-		MMJJ_RS07410	0.44	-0.1
1,361,082	-		MMJJ_RS07410	0.47	-0.5
1,361,203	-		MMJJ_RS07410	0.64	-0.7
1,361,216	+		MMJJ_RS07410	0.65	-1.2
1,361,396	-		MMJJ_RS07410	0.90	+0.3
1,361,396	-		MMJJ_RS07410	0.90	+0.3
1,361,396	-		MMJJ_RS07410	0.90	-1.5
1,361,397	+				+1.3
1,361,397	+				-1.2
1,361,400	-				+0.3
1,361,401	+				-0.7
1,361,401	+				-1.0
1,361,401	+				-0.2
1,361,401	+				-0.7
1,361,401	+				-0.7
1,361,404	-				-1.0
1,361,404	-				+1.3
1,361,405	+				+0.3
1,361,405	+				-0.7
1,361,602	-				-0.2
1,361,893	+		MMJJ_RS07415	0.51	-0.7
1,361,893	+		MMJJ_RS07415	0.51	+0.9
1,361,909	-				+1.3
1,361,913	-		MMJJ_RS07415	0.54	-1.2
1,361,924	-		MMJJ_RS07415	0.55	-1.0
1,361,990	+		MMJJ_RS07415	0.63	-1.0
1,362,052	-		MMJJ_RS07415	0.71	-1.0
1,362,202	+				+0.7
1,362,300	+				-2.8
1,362,304	-				+2.4
1,362,307	-				-1.4
1,362,339	+		MMJJ_RS07420	0.12	-2.6
1,362,339	+		MMJJ_RS07420	0.12	+0.6
1,362,339	+		MMJJ_RS07420	0.12	+1.2
1,362,339	+		MMJJ_RS07420	0.12	+0.1
1,362,339	+		MMJJ_RS07420	0.12	-0.1
1,362,350	-		MMJJ_RS07420	0.14	-1.7
1,362,350	-		MMJJ_RS07420	0.14	-1.4
1,362,350	-		MMJJ_RS07420	0.14	+0.6
1,362,350	-		MMJJ_RS07420	0.14	+1.2
1,362,351	+		MMJJ_RS07420	0.14	-2.3
1,362,351	+		MMJJ_RS07420	0.14	+0.9
1,362,353	-		MMJJ_RS07420	0.15	+0.8
1,362,383	+		MMJJ_RS07420	0.21	-0.1
1,362,390	+		MMJJ_RS07420	0.22	+2.1
1,362,419	+		MMJJ_RS07420	0.29	+3.1
1,362,425	+		MMJJ_RS07420	0.30	-2.7
1,362,449	-		MMJJ_RS07420	0.35	+1.1
1,362,449	-		MMJJ_RS07420	0.35	-0.1
1,362,449	-		MMJJ_RS07420	0.35	-1.0
1,362,450	+		MMJJ_RS07420	0.35	+1.7
1,362,477	+		MMJJ_RS07420	0.41	-0.1
1,362,496	-		MMJJ_RS07420	0.45	-3.5
1,362,496	-		MMJJ_RS07420	0.45	+1.8
1,362,496	-		MMJJ_RS07420	0.45	+1.3
1,362,496	-		MMJJ_RS07420	0.45	-2.1
1,362,497	+		MMJJ_RS07420	0.45	-2.1
1,362,498	-		MMJJ_RS07420	0.46	-0.8
1,362,498	-		MMJJ_RS07420	0.46	-0.9
1,362,498	-		MMJJ_RS07420	0.46	+3.8
1,362,511	+		MMJJ_RS07420	0.48	-0.5
1,362,721	+				-1.0
1,362,809	-				+0.8
1,362,810	+				-1.5
1,362,810	+				-1.0
1,362,811	-				-2.7
1,362,812	+				-1.5
1,362,812	+				-1.0
1,362,839	-				-1.4
1,362,863	-		MMJJ_RS07425	0.13	-1.8
1,363,093	+		MMJJ_RS07425	0.41	-1.3
1,363,145	+		MMJJ_RS07425	0.48	-1.7
1,363,145	+		MMJJ_RS07425	0.48	-1.5
1,363,165	-		MMJJ_RS07425	0.50	+0.3
1,363,165	-		MMJJ_RS07425	0.50	-1.0
1,363,165	-		MMJJ_RS07425	0.50	+0.7
1,363,166	+		MMJJ_RS07425	0.50	-1.3
1,363,204	-		MMJJ_RS07425	0.55	-0.9
1,363,204	-		MMJJ_RS07425	0.55	+1.3
1,363,204	-		MMJJ_RS07425	0.55	-0.8
1,363,212	+		MMJJ_RS07425	0.56	-1.0
1,363,212	+		MMJJ_RS07425	0.56	+0.3
1,363,212	+		MMJJ_RS07425	0.56	-0.4
1,363,234	-		MMJJ_RS07425	0.59	-2.3
1,363,234	-		MMJJ_RS07425	0.59	-4.0
1,363,244	-		MMJJ_RS07425	0.60	-0.5
1,363,260	-		MMJJ_RS07425	0.62	-1.0
1,363,261	+		MMJJ_RS07425	0.62	+0.6
1,363,261	+		MMJJ_RS07425	0.62	+1.8
1,363,261	+		MMJJ_RS07425	0.62	+0.3
1,363,274	+		MMJJ_RS07425	0.64	-1.6