Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS07390

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,356,035	+		MMJJ_RS07380	0.61	-0.2
1,356,049	-		MMJJ_RS07380	0.62	-0.4
1,356,049	-		MMJJ_RS07380	0.62	-1.7
1,356,061	+		MMJJ_RS07380	0.64	-1.0
1,356,064	-		MMJJ_RS07380	0.64	+0.3
1,356,065	+		MMJJ_RS07380	0.65	-0.7
1,356,067	-		MMJJ_RS07380	0.65	-0.9
1,356,102	+		MMJJ_RS07380	0.69	+0.6
1,356,120	+		MMJJ_RS07380	0.71	-1.0
1,356,188	-		MMJJ_RS07380	0.80	+1.5
1,356,188	-		MMJJ_RS07380	0.80	-1.2
1,356,205	-		MMJJ_RS07380	0.82	-0.2
1,356,206	+		MMJJ_RS07380	0.82	-2.7
1,356,219	-		MMJJ_RS07380	0.84	-0.4
1,356,219	-		MMJJ_RS07380	0.84	-0.2
1,356,220	+		MMJJ_RS07380	0.84	+0.5
1,356,220	+		MMJJ_RS07380	0.84	-0.7
1,356,246	-		MMJJ_RS07380	0.87	-0.1
1,356,288	-				-0.2
1,356,338	-				-1.5
1,356,338	-				+1.5
1,356,339	+				-2.5
1,356,342	-				+2.7
1,356,354	+				-2.6
1,356,354	+				-0.5
1,356,354	+				-1.4
1,356,354	+				-2.0
1,356,367	-				+0.7
1,356,376	+				-2.8
1,356,404	-				+0.0
1,356,455	+				+3.1
1,356,455	+				-0.6
1,356,458	-				+1.0
1,356,458	-				-1.2
1,356,458	-				+1.4
1,356,459	+				-0.4
1,356,460	-				+1.2
1,356,460	-				+2.6
1,356,463	-				-2.0
1,356,463	-				-1.0
1,356,463	-				-1.5
1,356,463	-				-0.7
1,356,464	+				+1.0
1,356,468	+				+1.3
1,356,506	-				-4.0
1,356,506	-				-3.2
1,356,506	-				-1.2
1,356,507	+				+0.2
1,356,515	-				-1.3
1,356,519	-				+1.0
1,356,614	-		MMJJ_RS07385	0.22	+0.4
1,356,614	-		MMJJ_RS07385	0.22	+1.5
1,356,614	-		MMJJ_RS07385	0.22	+1.3
1,356,614	-		MMJJ_RS07385	0.22	-1.0
1,356,614	-		MMJJ_RS07385	0.22	+0.4
1,356,614	-		MMJJ_RS07385	0.22	-0.2
1,356,614	-		MMJJ_RS07385	0.22	+0.3
1,356,615	+		MMJJ_RS07385	0.22	+3.4
1,356,615	+		MMJJ_RS07385	0.22	-0.2
1,356,615	+		MMJJ_RS07385	0.22	+2.8
1,356,616	-		MMJJ_RS07385	0.22	+1.9
1,356,617	+		MMJJ_RS07385	0.22	+1.5
1,356,617	+		MMJJ_RS07385	0.22	+0.7
1,356,617	+		MMJJ_RS07385	0.22	-2.1
1,356,617	+		MMJJ_RS07385	0.22	-2.0
1,356,641	-		MMJJ_RS07385	0.27	-0.7
1,356,677	+		MMJJ_RS07385	0.35	+0.6
1,356,717	+		MMJJ_RS07385	0.43	+0.9
1,356,735	+		MMJJ_RS07385	0.47	+0.7
1,356,735	+		MMJJ_RS07385	0.47	-0.7
1,356,748	-		MMJJ_RS07385	0.49	-1.0
1,356,749	+		MMJJ_RS07385	0.50	-0.1
1,356,771	-		MMJJ_RS07385	0.54	-0.2
1,356,771	-		MMJJ_RS07385	0.54	+1.3
1,356,772	+		MMJJ_RS07385	0.54	+2.7
1,356,866	+		MMJJ_RS07385	0.74	-0.4
1,356,867	-		MMJJ_RS07385	0.74	+1.9
1,356,867	-		MMJJ_RS07385	0.74	-0.7
1,356,868	+		MMJJ_RS07385	0.74	+3.3
1,356,868	+		MMJJ_RS07385	0.74	-1.2
1,356,878	+		MMJJ_RS07385	0.76	-1.5
1,356,885	-		MMJJ_RS07385	0.78	-1.8
1,356,900	-		MMJJ_RS07385	0.81	-1.1
1,356,901	+		MMJJ_RS07385	0.81	-0.2
1,356,901	+		MMJJ_RS07385	0.81	+0.5
1,356,901	+		MMJJ_RS07385	0.81	-1.6
1,356,904	-		MMJJ_RS07385	0.81	-3.0
1,356,905	+		MMJJ_RS07385	0.82	+1.5
1,356,905	+		MMJJ_RS07385	0.82	-0.3
1,356,907	-		MMJJ_RS07385	0.82	-0.2
1,356,930	+		MMJJ_RS07385	0.87	+0.3
1,356,938	-		MMJJ_RS07385	0.88	-2.7
1,356,938	-		MMJJ_RS07385	0.88	+0.1
1,356,968	+				-1.7
1,356,991	-				+1.4
1,356,991	-				-2.7
1,356,991	-				+2.3
1,356,991	-				+1.1
1,356,992	+				+2.7
1,356,996	+				-3.0
1,357,028	-				+1.9
1,357,028	-				-0.7
1,357,028	-				-0.9
1,357,028	-				+5.3
1,357,028	-				-0.9
1,357,028	-				-1.0
1,357,028	-				-3.6
1,357,028	-				+0.5
1,357,028	-				+0.1
1,357,028	-				-0.9
1,357,028	-				+2.8
1,357,029	+				+1.3
1,357,029	+				-1.1
1,357,029	+				-0.2
1,357,029	+				-0.7
1,357,029	+				-0.9
1,357,029	+				-1.8
1,357,030	-				+1.0
1,357,030	-				+4.1
1,357,030	-				+1.2
1,357,030	-				-2.8
1,357,030	-				+0.3
1,357,030	-				-0.9
1,357,030	-				-1.0
1,357,031	+				+2.7
1,357,031	+				-1.6
1,357,031	+				-1.7
1,357,037	+				+0.0
1,357,037	+				+0.9
1,357,083	-				-0.3
1,357,084	+				-2.4
1,357,084	+				-1.5
1,357,084	+				+2.7
1,357,084	+				-1.0
1,357,084	+				+0.7
1,357,086	-				+1.3
1,357,139	-		MMJJ_RS07390	0.11	+2.8
1,357,139	-		MMJJ_RS07390	0.11	-0.5
1,357,139	-		MMJJ_RS07390	0.11	+1.8
1,357,140	+		MMJJ_RS07390	0.11	-0.6
1,357,143	-		MMJJ_RS07390	0.11	-1.0
1,357,144	+		MMJJ_RS07390	0.11	+2.3
1,357,166	-		MMJJ_RS07390	0.13	-1.7
1,357,209	+		MMJJ_RS07390	0.16	+5.3
1,357,271	-		MMJJ_RS07390	0.21	+1.1
1,357,271	-		MMJJ_RS07390	0.21	+2.0
1,357,317	-		MMJJ_RS07390	0.24	+0.8
1,357,318	+		MMJJ_RS07390	0.24	-2.8
1,357,386	-		MMJJ_RS07390	0.29	-0.2
1,357,387	+		MMJJ_RS07390	0.29	-2.4
1,357,390	+		MMJJ_RS07390	0.30	+1.1
1,357,460	-		MMJJ_RS07390	0.35	-2.0
1,357,475	-		MMJJ_RS07390	0.36	-0.5
1,357,475	-		MMJJ_RS07390	0.36	+3.2
1,357,475	-		MMJJ_RS07390	0.36	-0.3
1,357,475	-		MMJJ_RS07390	0.36	+1.3
1,357,476	+		MMJJ_RS07390	0.36	-0.4
1,357,476	+		MMJJ_RS07390	0.36	-0.4
1,357,476	+		MMJJ_RS07390	0.36	-1.2
1,357,476	+		MMJJ_RS07390	0.36	-0.7
1,357,476	+		MMJJ_RS07390	0.36	-0.7
1,357,477	-		MMJJ_RS07390	0.36	+1.6
1,357,477	-		MMJJ_RS07390	0.36	-0.1
1,357,478	+		MMJJ_RS07390	0.36	+1.0
1,357,478	+		MMJJ_RS07390	0.36	+2.4
1,357,478	+		MMJJ_RS07390	0.36	+4.0
1,357,478	+		MMJJ_RS07390	0.36	+1.3
1,357,479	-		MMJJ_RS07390	0.36	+2.9
1,357,574	-		MMJJ_RS07390	0.44	+1.9
1,357,648	-		MMJJ_RS07390	0.49	+0.3
1,357,710	-		MMJJ_RS07390	0.54	+2.3
1,357,711	+		MMJJ_RS07390	0.54	-1.0
1,357,712	-		MMJJ_RS07390	0.54	+1.6
1,357,712	-		MMJJ_RS07390	0.54	-2.2
1,357,712	-		MMJJ_RS07390	0.54	+0.3
1,357,712	-		MMJJ_RS07390	0.54	+2.2
1,357,713	+		MMJJ_RS07390	0.54	+0.1
1,357,713	+		MMJJ_RS07390	0.54	-3.6
1,357,713	+		MMJJ_RS07390	0.54	+5.5
1,357,713	+		MMJJ_RS07390	0.54	-2.0
1,357,713	+		MMJJ_RS07390	0.54	+0.3
1,357,756	-		MMJJ_RS07390	0.58	-0.9
1,357,792	-		MMJJ_RS07390	0.60	-2.1
1,357,917	+		MMJJ_RS07390	0.70	+1.1
1,357,940	-		MMJJ_RS07390	0.72	-0.2
1,357,941	+		MMJJ_RS07390	0.72	-2.0
1,357,941	+		MMJJ_RS07390	0.72	+1.8
1,357,990	+		MMJJ_RS07390	0.75	+0.6
1,358,022	+		MMJJ_RS07390	0.78	+1.4
1,358,022	+		MMJJ_RS07390	0.78	+1.3
1,358,069	-		MMJJ_RS07390	0.81	-1.5
1,358,069	-		MMJJ_RS07390	0.81	+0.3
1,358,101	+		MMJJ_RS07390	0.84	+1.4
1,358,206	+				+1.3
1,358,206	+				+2.3
1,358,208	-				+0.1
1,358,209	+				+1.4
1,358,214	-				+1.0
1,358,214	-				+1.2
1,358,215	+				-1.8
1,358,228	-				+0.3
1,358,228	-				-0.2
1,358,228	-				-2.8
1,358,229	+				+0.2
1,358,229	+				+1.4
1,358,229	+				+0.2
1,358,230	-				-0.2
1,358,262	-				+1.1
1,358,264	-				-0.7
1,358,265	+				+3.1
1,358,265	+				-0.2
1,358,265	+				-2.0
1,358,282	-				-1.2
1,358,286	+				-1.1
1,358,289	-				-0.1
1,358,289	-				+3.2
1,358,289	-				+1.2
1,358,289	-				+0.8
1,358,289	-				+2.7
1,358,290	+				-0.1
1,358,293	-				+1.4
1,358,311	-				+1.3
1,358,372	+				-0.7
1,358,425	+		MMJJ_RS07395	0.12	+0.3
1,358,861	-		MMJJ_RS07395	0.68	+2.1
1,359,114	-				-0.9
1,359,168	-				+2.1
1,359,237	-				-0.0
1,359,237	-				-2.0
1,359,238	+				-1.7
1,359,241	+				+1.6
1,359,261	-		MMJJ_RS07400	0.12	-0.4
1,359,269	+		MMJJ_RS07400	0.12	-1.0
1,359,306	-		MMJJ_RS07400	0.16	-0.2