Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS07360

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,350,652	+		MMJJ_RS07345	0.89	+0.3
1,350,655	-		MMJJ_RS07345	0.89	-0.8
1,350,655	-		MMJJ_RS07345	0.89	-1.2
1,350,655	-		MMJJ_RS07345	0.89	-1.2
1,350,655	-		MMJJ_RS07345	0.89	+0.3
1,350,655	-				+2.3
1,350,656	+		MMJJ_RS07345	0.89	-0.7
1,350,656	+		MMJJ_RS07345	0.89	-0.7
1,350,656	+		MMJJ_RS07345	0.89	-0.7
1,350,656	+		MMJJ_RS07345	0.89	+1.3
1,350,657	-		MMJJ_RS07345	0.89	+0.1
1,350,657	-		MMJJ_RS07345	0.89	+0.9
1,350,657	-		MMJJ_RS07345	0.89	-1.5
1,350,658	+		MMJJ_RS07345	0.89	-2.4
1,350,658	+		MMJJ_RS07345	0.89	-1.7
1,350,658	+		MMJJ_RS07345	0.89	-1.8
1,350,658	+		MMJJ_RS07345	0.89	-0.7
1,350,659	-				+0.3
1,350,659	-		MMJJ_RS07345	0.89	-0.2
1,350,660	+		MMJJ_RS07345	0.89	-0.5
1,350,660	+		MMJJ_RS07345	0.89	-2.7
1,350,660	+		MMJJ_RS07345	0.89	+0.3
1,350,660	+		MMJJ_RS07345	0.89	-0.7
1,350,660	+		MMJJ_RS07345	0.89	+2.1
1,350,660	+		MMJJ_RS07345	0.89	-0.7
1,350,662	-		MMJJ_RS07345	0.89	+1.9
1,350,684	-				+1.3
1,350,685	+				-0.7
1,350,784	+				-1.2
1,350,879	-		MMJJ_RS07350	0.10	-1.6
1,350,921	-		MMJJ_RS07350	0.21	-1.2
1,350,927	-		MMJJ_RS07350	0.22	-1.2
1,350,927	-		MMJJ_RS07350	0.22	+0.0
1,350,931	-		MMJJ_RS07350	0.23	+2.1
1,350,932	+		MMJJ_RS07350	0.23	-0.7
1,350,937	+		MMJJ_RS07350	0.25	+0.3
1,351,020	-		MMJJ_RS07350	0.45	+0.3
1,351,200	-				-1.8
1,351,219	-				-2.6
1,351,225	+				+2.2
1,351,236	+				-1.6
1,351,248	+				-3.4
1,351,272	+				+3.3
1,351,289	-				+0.2
1,351,350	+		MMJJ_RS07355	0.27	+0.7
1,351,355	-		MMJJ_RS07355	0.29	-0.7
1,351,409	-		MMJJ_RS07355	0.50	-1.8
1,351,409	-		MMJJ_RS07355	0.50	-0.0
1,351,443	+		MMJJ_RS07355	0.63	-0.9
1,351,443	+		MMJJ_RS07355	0.63	-2.3
1,351,483	+		MMJJ_RS07355	0.79	-1.6
1,351,484	-		MMJJ_RS07355	0.79	+0.3
1,351,484	-		MMJJ_RS07355	0.79	+0.0
1,351,485	+		MMJJ_RS07355	0.80	+0.9
1,351,485	+		MMJJ_RS07355	0.80	+1.8
1,351,485	+		MMJJ_RS07355	0.80	-0.5
1,351,485	+		MMJJ_RS07355	0.80	-1.2
1,351,487	-		MMJJ_RS07355	0.80	-2.7
1,351,487	-		MMJJ_RS07355	0.80	-2.3
1,351,492	+		MMJJ_RS07355	0.82	-0.7
1,351,512	+				+2.8
1,351,514	+				-0.0
1,351,514	+				-2.6
1,351,514	+				+0.4
1,351,541	+				-1.8
1,351,583	-				-0.3
1,351,584	+				+0.3
1,351,585	-				-0.8
1,351,585	-				-2.8
1,351,617	-				-1.3
1,352,086	-		MMJJ_RS07360	0.57	-0.7
1,352,192	-		MMJJ_RS07360	0.68	-1.8
1,352,331	+		MMJJ_RS07360	0.83	-1.7
1,352,425	+				-1.0
1,352,485	-				+0.8
1,352,485	-				-1.1
1,352,493	-				+0.8
1,352,526	-				+0.4
1,352,526	-				-1.8
1,352,527	+				-1.0
1,352,556	+				+1.1
1,352,646	+		MMJJ_RS07365	0.21	-2.9
1,352,673	-		MMJJ_RS07365	0.25	+1.2
1,352,674	+		MMJJ_RS07365	0.25	-1.5
1,352,674	+		MMJJ_RS07365	0.25	-1.6
1,352,674	+		MMJJ_RS07365	0.25	-1.1
1,352,674	+		MMJJ_RS07365	0.25	-1.0
1,352,678	-		MMJJ_RS07365	0.25	-1.0
1,352,678	-		MMJJ_RS07365	0.25	+1.0
1,352,678	-		MMJJ_RS07365	0.25	+2.0
1,352,678	-		MMJJ_RS07365	0.25	+2.9
1,352,678	-		MMJJ_RS07365	0.25	-1.0
1,352,679	+		MMJJ_RS07365	0.26	-0.7
1,352,679	+		MMJJ_RS07365	0.26	+0.2
1,352,680	-		MMJJ_RS07365	0.26	+0.8
1,352,705	-		MMJJ_RS07365	0.29	+1.9
1,352,705	-		MMJJ_RS07365	0.29	-0.4
1,352,706	+		MMJJ_RS07365	0.30	+2.6
1,352,754	+		MMJJ_RS07365	0.37	+1.7
1,352,760	-		MMJJ_RS07365	0.37	-0.3
1,352,761	+		MMJJ_RS07365	0.38	+1.6
1,352,779	+		MMJJ_RS07365	0.40	+1.6
1,352,839	+		MMJJ_RS07365	0.49	-1.7
1,352,863	+		MMJJ_RS07365	0.53	+2.3
1,352,875	-		MMJJ_RS07365	0.54	+0.9
1,352,875	-		MMJJ_RS07365	0.54	-3.5
1,352,876	+		MMJJ_RS07365	0.54	-0.3
1,352,876	+		MMJJ_RS07365	0.54	-0.3
1,352,894	+		MMJJ_RS07365	0.57	-2.5
1,352,919	-		MMJJ_RS07365	0.61	+3.3
1,352,919	-		MMJJ_RS07365	0.61	+1.5
1,352,920	+		MMJJ_RS07365	0.61	+3.6
1,352,920	+		MMJJ_RS07365	0.61	-1.8
1,352,920	+		MMJJ_RS07365	0.61	+1.0
1,352,961	+		MMJJ_RS07365	0.67	+5.0
1,352,964	-		MMJJ_RS07365	0.67	-1.7
1,353,004	-		MMJJ_RS07365	0.73	+2.1
1,353,004	-		MMJJ_RS07365	0.73	-1.2
1,353,011	-		MMJJ_RS07365	0.74	+3.1
1,353,011	-		MMJJ_RS07365	0.74	-1.7
1,353,011	-		MMJJ_RS07365	0.74	+1.9
1,353,011	-		MMJJ_RS07365	0.74	+0.3
1,353,012	+		MMJJ_RS07365	0.74	-1.6
1,353,053	+		MMJJ_RS07365	0.80	+1.5
1,353,056	-		MMJJ_RS07365	0.81	+2.2
1,353,057	+		MMJJ_RS07365	0.81	-2.1
1,353,057	+		MMJJ_RS07365	0.81	+1.1
1,353,057	+		MMJJ_RS07365	0.81	+0.5
1,353,057	+		MMJJ_RS07365	0.81	+1.2
1,353,124	-				-0.4
1,353,149	-				+3.7
1,353,152	-				-1.9
1,353,161	+				-2.5
1,353,176	-				+1.2
1,353,188	-				-0.9
1,353,188	-				-1.2
1,353,188	-				+0.7
1,353,190	-				-1.3
1,353,197	-				+2.7
1,353,197	-				-1.8
1,353,285	-				-0.3