Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS07245

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,326,160	-		MMJJ_RS07240	0.27	-0.8
1,326,161	+		MMJJ_RS07240	0.27	-1.0
1,326,169	+		MMJJ_RS07240	0.27	-2.8
1,326,204	+		MMJJ_RS07240	0.30	+0.5
1,326,209	-		MMJJ_RS07240	0.30	+0.4
1,326,209	-		MMJJ_RS07240	0.30	+0.4
1,326,209	-		MMJJ_RS07240	0.30	-0.8
1,326,209	-		MMJJ_RS07240	0.30	-0.6
1,326,210	+		MMJJ_RS07240	0.30	-0.1
1,326,210	+		MMJJ_RS07240	0.30	-0.1
1,326,210	+		MMJJ_RS07240	0.30	-1.6
1,326,247	+		MMJJ_RS07240	0.33	-1.8
1,326,247	+		MMJJ_RS07240	0.33	-2.9
1,326,325	-		MMJJ_RS07240	0.40	-2.0
1,326,325	-		MMJJ_RS07240	0.40	-1.4
1,326,325	-		MMJJ_RS07240	0.40	-2.0
1,326,325	-		MMJJ_RS07240	0.40	+3.6
1,326,326	+		MMJJ_RS07240	0.40	-0.2
1,326,326	+		MMJJ_RS07240	0.40	-1.2
1,326,326	+		MMJJ_RS07240	0.40	-1.8
1,326,326	+		MMJJ_RS07240	0.40	+2.5
1,326,361	-		MMJJ_RS07240	0.42	-1.1
1,326,379	+		MMJJ_RS07240	0.44	-2.8
1,326,397	-		MMJJ_RS07240	0.45	+0.8
1,326,397	-		MMJJ_RS07240	0.45	-2.1
1,326,397	-		MMJJ_RS07240	0.45	-2.1
1,326,397	-		MMJJ_RS07240	0.45	-0.6
1,326,397	-		MMJJ_RS07240	0.45	-1.9
1,326,397	-		MMJJ_RS07240	0.45	-0.2
1,326,398	+		MMJJ_RS07240	0.45	-2.3
1,326,398	+		MMJJ_RS07240	0.45	-3.6
1,326,398	+		MMJJ_RS07240	0.45	+3.7
1,326,398	+		MMJJ_RS07240	0.45	-3.4
1,326,402	+		MMJJ_RS07240	0.46	+2.0
1,326,402	+		MMJJ_RS07240	0.46	+1.4
1,326,453	+		MMJJ_RS07240	0.50	-1.0
1,326,531	-		MMJJ_RS07240	0.56	-2.1
1,326,531	-		MMJJ_RS07240	0.56	+2.1
1,326,531	-		MMJJ_RS07240	0.56	-1.4
1,326,532	+		MMJJ_RS07240	0.56	+1.0
1,326,532	+		MMJJ_RS07240	0.56	-1.5
1,326,532	+		MMJJ_RS07240	0.56	-0.6
1,326,533	-		MMJJ_RS07240	0.56	+0.9
1,326,533	-		MMJJ_RS07240	0.56	+1.4
1,326,534	+		MMJJ_RS07240	0.56	-2.2
1,326,534	+		MMJJ_RS07240	0.56	-1.9
1,326,537	-		MMJJ_RS07240	0.56	+4.6
1,326,537	-		MMJJ_RS07240	0.56	-1.2
1,326,538	+		MMJJ_RS07240	0.56	-3.0
1,326,538	+		MMJJ_RS07240	0.56	-2.0
1,326,538	+		MMJJ_RS07240	0.56	+4.2
1,326,538	+		MMJJ_RS07240	0.56	+0.0
1,326,551	+		MMJJ_RS07240	0.57	-2.8
1,326,567	-		MMJJ_RS07240	0.59	+3.9
1,326,568	+		MMJJ_RS07240	0.59	+0.0
1,326,568	+		MMJJ_RS07240	0.59	-0.4
1,326,632	-				+1.4
1,326,633	+		MMJJ_RS07240	0.64	+3.1
1,326,633	+		MMJJ_RS07240	0.64	-1.3
1,326,641	-		MMJJ_RS07240	0.64	-2.3
1,326,641	-		MMJJ_RS07240	0.64	+0.6
1,326,642	+		MMJJ_RS07240	0.65	+0.2
1,326,643	-		MMJJ_RS07240	0.65	+2.4
1,326,643	-		MMJJ_RS07240	0.65	+1.8
1,326,643	-		MMJJ_RS07240	0.65	-0.2
1,326,643	-		MMJJ_RS07240	0.65	-1.8
1,326,644	+		MMJJ_RS07240	0.65	-2.3
1,326,644	+		MMJJ_RS07240	0.65	+1.2
1,326,644	+		MMJJ_RS07240	0.65	-1.7
1,326,644	+		MMJJ_RS07240	0.65	-0.6
1,326,644	+		MMJJ_RS07240	0.65	+3.2
1,326,645	-				+0.4
1,326,646	+		MMJJ_RS07240	0.65	-2.6
1,326,646	+		MMJJ_RS07240	0.65	+1.8
1,326,648	-		MMJJ_RS07240	0.65	+0.6
1,326,670	+		MMJJ_RS07240	0.67	-1.6
1,326,670	+		MMJJ_RS07240	0.67	+0.3
1,326,670	+		MMJJ_RS07240	0.67	-2.3
1,326,673	-		MMJJ_RS07240	0.67	+1.0
1,326,673	-		MMJJ_RS07240	0.67	+2.9
1,326,674	+		MMJJ_RS07240	0.67	-1.6
1,326,691	+		MMJJ_RS07240	0.68	+5.0
1,326,695	-		MMJJ_RS07240	0.69	+3.0
1,326,695	-		MMJJ_RS07240	0.69	-0.1
1,326,696	+		MMJJ_RS07240	0.69	+1.9
1,326,696	+		MMJJ_RS07240	0.69	+0.7
1,326,709	-		MMJJ_RS07240	0.70	+1.3
1,326,709	-		MMJJ_RS07240	0.70	-1.6
1,326,722	-		MMJJ_RS07240	0.71	+3.2
1,326,734	-		MMJJ_RS07240	0.72	-1.7
1,326,753	+		MMJJ_RS07240	0.73	-1.0
1,326,754	-		MMJJ_RS07240	0.73	+2.4
1,326,754	-		MMJJ_RS07240	0.73	+4.1
1,326,755	+		MMJJ_RS07240	0.73	-0.3
1,326,755	+		MMJJ_RS07240	0.73	+0.5
1,326,772	+		MMJJ_RS07240	0.75	+3.0
1,326,772	+		MMJJ_RS07240	0.75	-3.5
1,326,806	+		MMJJ_RS07240	0.77	+1.0
1,326,806	+		MMJJ_RS07240	0.77	+0.8
1,326,827	-		MMJJ_RS07240	0.79	-1.2
1,326,827	-		MMJJ_RS07240	0.79	-2.3
1,326,827	-		MMJJ_RS07240	0.79	+1.3
1,326,837	-		MMJJ_RS07240	0.80	+1.7
1,326,837	-		MMJJ_RS07240	0.80	-2.0
1,326,838	+		MMJJ_RS07240	0.80	-0.1
1,326,844	-		MMJJ_RS07240	0.80	-2.4
1,326,844	-		MMJJ_RS07240	0.80	+2.0
1,326,845	+		MMJJ_RS07240	0.81	-1.4
1,326,845	+		MMJJ_RS07240	0.81	+2.5
1,326,845	+		MMJJ_RS07240	0.81	+1.4
1,326,849	-		MMJJ_RS07240	0.81	-2.4
1,326,850	+		MMJJ_RS07240	0.81	-1.8
1,326,870	+		MMJJ_RS07240	0.83	+0.7
1,326,876	-		MMJJ_RS07240	0.83	-2.1
1,326,896	+		MMJJ_RS07240	0.85	+1.8
1,326,900	-		MMJJ_RS07240	0.85	+2.6
1,326,900	-		MMJJ_RS07240	0.85	-1.7
1,326,901	+		MMJJ_RS07240	0.85	+2.1
1,326,901	+		MMJJ_RS07240	0.85	+1.5
1,327,008	-				-2.2
1,327,012	+				+1.8
1,327,033	+				-0.2
1,327,092	-				-0.3
1,327,101	-				+2.1
1,327,102	+				-0.4
1,327,110	-				-2.3
1,327,110	-				-0.3
1,327,112	-				+2.4
1,327,113	+				+0.2
1,327,113	+				+1.6
1,327,141	-				-0.1
1,327,149	+				+3.2
1,327,149	+				+2.9
1,327,153	-				+1.5
1,327,274	+		MMJJ_RS07245	0.11	-1.4
1,327,367	+		MMJJ_RS07245	0.19	-1.2
1,327,425	+		MMJJ_RS07245	0.24	-1.2
1,327,452	+		MMJJ_RS07245	0.27	-0.2
1,327,516	+		MMJJ_RS07245	0.33	-0.2
1,327,518	-		MMJJ_RS07245	0.33	-0.6
1,327,519	+		MMJJ_RS07245	0.33	-1.0
1,327,519	+		MMJJ_RS07245	0.33	-0.6
1,327,542	-		MMJJ_RS07245	0.35	-1.4
1,327,600	+		MMJJ_RS07245	0.40	+0.4
1,327,908	+		MMJJ_RS07245	0.68	-2.0
1,327,949	-		MMJJ_RS07245	0.71	-1.8
1,328,009	-		MMJJ_RS07245	0.77	-1.2
1,328,013	-		MMJJ_RS07245	0.77	-2.0
1,328,079	+		MMJJ_RS07245	0.83	-0.2
1,328,088	+		MMJJ_RS07245	0.84	-0.6
1,328,121	+				+1.4
1,328,243	+				-1.2
1,328,245	+				-2.2
1,328,289	+				-0.9
1,328,392	+				-0.2
1,328,463	-		MMJJ_RS07250	0.19	-1.0
1,328,763	+		MMJJ_RS07250	0.66	-0.2
1,328,975	+				-0.7
1,328,980	-				+0.5
1,329,003	+				-1.5
1,329,012	-				+1.3
1,329,022	+		MMJJ_RS09365	0.13	-1.9
1,329,040	+		MMJJ_RS09365	0.22	+3.1
1,329,071	+		MMJJ_RS09365	0.39	-3.0
1,329,145	+		MMJJ_RS09365	0.77	-1.7
1,329,176	-				+0.0
1,329,181	+				-1.8
1,329,200	+				+2.9
1,329,209	-				+1.8
1,329,225	+				+2.2
1,329,242	+				+1.9
1,329,244	-				+0.3
1,329,244	-				+0.1
1,329,244	-				-0.7
1,329,245	+				+3.3
1,329,245	+				-2.2
1,329,255	-				+2.4
1,329,255	-				-2.8
1,329,255	-				+1.6
1,329,256	+				+0.4
1,329,260	+				+0.7
1,329,270	-				+1.1