Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS06925

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,270,157	-		MMJJ_RS06915	0.68	-1.5
1,270,158	+		MMJJ_RS06915	0.69	-0.3
1,270,302	-				-3.0
1,270,326	+				+0.4
1,270,345	+				-0.1
1,270,430	-				-1.9
1,270,431	+				-2.9
1,270,434	-				+0.9
1,270,434	-				+0.9
1,270,434	-				+0.4
1,270,434	-				+0.3
1,270,435	+				-0.4
1,270,437	+				+2.9
1,270,472	-				+1.3
1,270,472	-				+1.4
1,270,472	-				-0.0
1,270,472	-				+0.6
1,270,473	+				+1.2
1,270,473	+				+2.4
1,270,494	+				-1.3
1,270,498	-				-0.0
1,270,499	+				+1.2
1,270,499	+				-2.3
1,270,499	+				-1.4
1,270,509	+				-3.0
1,270,561	-				-0.2
1,270,728	+				-0.6
1,270,772	+		MMJJ_RS06920	0.40	-2.6
1,270,846	+		MMJJ_RS06920	0.53	+0.4
1,271,083	-				-1.5
1,271,093	-				-0.7
1,271,094	+				+2.6
1,271,096	-				+1.5
1,271,096	-				+0.4
1,271,098	-				-2.2
1,271,099	+				-0.4
1,271,099	+				+1.2
1,271,103	+				+2.1
1,271,103	+				+0.4
1,271,113	+				-2.7
1,271,113	+				-0.1
1,271,142	-				-0.4
1,271,142	-				-3.0
1,271,146	-				-3.2
1,271,147	+				+2.5
1,271,549	-		MMJJ_RS06925	0.69	+2.7
1,271,641	+				+0.4
1,271,688	-				+0.8
1,271,957	+		MMJJ_RS06930	0.24	+0.4
1,272,013	+		MMJJ_RS06930	0.30	-1.2
1,272,013	+				-0.6
1,272,160	-		MMJJ_RS06930	0.47	-1.0
1,272,161	+		MMJJ_RS06930	0.47	-1.4
1,272,277	-		MMJJ_RS06930	0.60	+0.4
1,272,328	-		MMJJ_RS06930	0.66	-1.1
1,272,554	+				+1.4
1,272,610	+				-0.2
1,272,671	-				+1.8
1,272,671	-				-0.7
1,272,672	+				-1.0
1,272,674	+				-0.6
1,272,674	+				-0.6
1,272,686	-				-2.8