Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS06915

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,268,791	-		MMJJ_RS06900	0.33	+1.4
1,268,861	-				+1.4
1,268,972	+				+1.4
1,269,166	+		MMJJ_RS06905	0.40	-1.2
1,269,166	+				+0.4
1,269,181	-		MMJJ_RS06905	0.43	+1.4
1,269,181	-		MMJJ_RS06905	0.43	-0.2
1,269,276	-		MMJJ_RS06905	0.62	+0.4
1,269,453	-				-0.6
1,269,462	-				-1.2
1,269,523	-		MMJJ_RS06910	0.28	+0.4
1,269,523	-		MMJJ_RS06910	0.28	-1.8
1,269,527	+		MMJJ_RS06910	0.30	-1.0
1,269,553	-		MMJJ_RS06910	0.39	+0.1
1,269,554	+		MMJJ_RS06910	0.40	-1.0
1,269,654	-		MMJJ_RS06910	0.77	-1.0
1,269,668	+				+1.4
1,269,732	-				+0.4
1,269,733	+				-2.0
1,269,755	-				-2.2
1,269,760	-				-2.0
1,269,760	-				-0.2
1,269,760	-				-0.6
1,269,813	-		MMJJ_RS06915	0.15	-3.1
1,269,821	-		MMJJ_RS06915	0.16	-0.5
1,269,821	-		MMJJ_RS06915	0.16	-2.1
1,269,825	-		MMJJ_RS06915	0.16	-1.3
1,269,825	-		MMJJ_RS06915	0.16	-3.4
1,269,826	+		MMJJ_RS06915	0.17	-0.2
1,269,830	-		MMJJ_RS06915	0.17	-1.9
1,269,862	+		MMJJ_RS06915	0.22	-0.6
1,269,867	-		MMJJ_RS06915	0.23	-0.3
1,269,870	+		MMJJ_RS06915	0.23	-2.8
1,269,870	+		MMJJ_RS06915	0.23	-1.6
1,269,905	-		MMJJ_RS06915	0.29	-1.7
1,269,915	+				+1.4
1,269,982	-		MMJJ_RS06915	0.41	-2.4
1,269,983	+		MMJJ_RS06915	0.41	+1.4
1,269,993	-		MMJJ_RS06915	0.43	-3.1
1,269,993	-		MMJJ_RS06915	0.43	-1.6
1,269,993	-		MMJJ_RS06915	0.43	-2.2
1,269,993	-		MMJJ_RS06915	0.43	-2.8
1,269,993	-		MMJJ_RS06915	0.43	-3.5
1,269,993	-		MMJJ_RS06915	0.43	-2.5
1,269,993	-		MMJJ_RS06915	0.43	-0.2
1,269,993	-		MMJJ_RS06915	0.43	-2.3
1,269,993	-		MMJJ_RS06915	0.43	-2.2
1,269,993	-		MMJJ_RS06915	0.43	-1.6
1,269,993	-		MMJJ_RS06915	0.43	-2.8
1,269,993	-		MMJJ_RS06915	0.43	-2.2
1,269,994	+		MMJJ_RS06915	0.43	+1.4
1,269,994	+		MMJJ_RS06915	0.43	+0.4
1,269,995	-		MMJJ_RS06915	0.43	-0.2
1,269,995	-		MMJJ_RS06915	0.43	-1.0
1,270,000	-		MMJJ_RS06915	0.44	-0.2
1,270,000	-		MMJJ_RS06915	0.44	-1.5
1,270,000	-		MMJJ_RS06915	0.44	-0.6
1,270,000	-		MMJJ_RS06915	0.44	-3.0
1,270,001	+		MMJJ_RS06915	0.44	-0.2
1,270,001	+		MMJJ_RS06915	0.44	-0.2
1,270,002	-		MMJJ_RS06915	0.44	-1.0
1,270,003	+		MMJJ_RS06915	0.44	-0.2
1,270,003	+		MMJJ_RS06915	0.44	-1.0
1,270,021	-		MMJJ_RS06915	0.47	-1.4
1,270,021	-		MMJJ_RS06915	0.47	-3.0
1,270,021	-		MMJJ_RS06915	0.47	-2.3
1,270,022	+		MMJJ_RS06915	0.47	-2.6
1,270,028	-		MMJJ_RS06915	0.48	-1.4
1,270,029	+		MMJJ_RS06915	0.48	-2.8
1,270,038	+		MMJJ_RS06915	0.50	-1.5
1,270,077	+		MMJJ_RS06915	0.56	-1.7
1,270,104	-		MMJJ_RS06915	0.60	-2.6
1,270,114	+		MMJJ_RS06915	0.62	-1.1
1,270,114	+		MMJJ_RS06915	0.62	-0.4
1,270,117	-		MMJJ_RS06915	0.62	-0.3
1,270,118	+		MMJJ_RS06915	0.62	-1.8
1,270,125	+		MMJJ_RS06915	0.63	+0.1
1,270,157	-		MMJJ_RS06915	0.68	-1.5
1,270,158	+		MMJJ_RS06915	0.69	-0.3
1,270,302	-				-3.0
1,270,326	+				+0.4
1,270,345	+				-0.1
1,270,430	-				-1.9
1,270,431	+				-2.9
1,270,434	-				+0.9
1,270,434	-				+0.9
1,270,434	-				+0.4
1,270,434	-				+0.3
1,270,435	+				-0.4
1,270,437	+				+2.9
1,270,472	-				+1.3
1,270,472	-				+1.4
1,270,472	-				-0.0
1,270,472	-				+0.6
1,270,473	+				+1.2
1,270,473	+				+2.4
1,270,494	+				-1.3
1,270,498	-				-0.0
1,270,499	+				+1.2
1,270,499	+				-2.3
1,270,499	+				-1.4
1,270,509	+				-3.0
1,270,561	-				-0.2
1,270,728	+				-0.6
1,270,772	+		MMJJ_RS06920	0.40	-2.6
1,270,846	+		MMJJ_RS06920	0.53	+0.4
1,271,083	-				-1.5
1,271,093	-				-0.7
1,271,094	+				+2.6
1,271,096	-				+1.5
1,271,096	-				+0.4
1,271,098	-				-2.2
1,271,099	+				-0.4
1,271,099	+				+1.2
1,271,103	+				+2.1
1,271,103	+				+0.4
1,271,113	+				-2.7
1,271,113	+				-0.1
1,271,142	-				-0.4
1,271,142	-				-3.0
1,271,146	-				-3.2
1,271,147	+				+2.5