Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS06865

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMJJ_RS06850 and MMJJ_RS06855 are separated by 15 nucleotidesMMJJ_RS06855 and MMJJ_RS06860 are separated by 4 nucleotidesMMJJ_RS06860 and MMJJ_RS06865 are separated by 8 nucleotidesMMJJ_RS06865 and MMJJ_RS06870 are separated by 19 nucleotidesMMJJ_RS06870 and MMJJ_RS06875 are separated by 9 nucleotidesMMJJ_RS06875 and MMJJ_RS06880 are separated by 21 nucleotides MMJJ_RS06850: MMJJ_RS06850 - DUF1959 domain-containing protein, at 1,264,222 to 1,264,632 _RS06850 MMJJ_RS06855: MMJJ_RS06855 - DUF2104 domain-containing protein, at 1,264,648 to 1,264,947 _RS06855 MMJJ_RS06860: MMJJ_RS06860 - hypothetical protein, at 1,264,952 to 1,265,203 _RS06860 MMJJ_RS06865: MMJJ_RS06865 - NADH-quinone oxidoreductase subunit H, at 1,265,212 to 1,266,072 _RS06865 MMJJ_RS06870: MMJJ_RS06870 - hypothetical protein, at 1,266,092 to 1,266,301 _RS06870 MMJJ_RS06875: MMJJ_RS06875 - hypothetical protein, at 1,266,311 to 1,266,973 _RS06875 MMJJ_RS06880: MMJJ_RS06880 - EhaG family protein, at 1,266,995 to 1,267,681 _RS06880 Position (kb) 1265 1266 1267Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1264.223 kb on - strandat 1264.224 kb on + strandat 1264.246 kb on + strandat 1264.252 kb on + strandat 1264.252 kb on + strandat 1264.381 kb on - strand, within MMJJ_RS06850at 1264.627 kb on - strandat 1264.649 kb on - strandat 1264.650 kb on + strandat 1264.666 kb on - strandat 1264.670 kb on + strandat 1264.683 kb on - strand, within MMJJ_RS06855at 1264.684 kb on + strandat 1264.693 kb on - strand, within MMJJ_RS06855at 1264.760 kb on + strand, within MMJJ_RS06855at 1264.924 kb on - strandat 1264.927 kb on - strandat 1264.988 kb on + strand, within MMJJ_RS06860at 1264.997 kb on - strand, within MMJJ_RS06860at 1265.026 kb on - strand, within MMJJ_RS06860at 1265.066 kb on - strand, within MMJJ_RS06860at 1265.137 kb on - strand, within MMJJ_RS06860at 1265.140 kb on - strand, within MMJJ_RS06860at 1265.140 kb on - strand, within MMJJ_RS06860at 1265.140 kb on - strand, within MMJJ_RS06860at 1265.145 kb on + strandat 1265.193 kb on - strandat 1265.194 kb on + strandat 1265.228 kb on - strandat 1265.316 kb on - strand, within MMJJ_RS06865at 1265.375 kb on + strand, within MMJJ_RS06865at 1265.499 kb on - strand, within MMJJ_RS06865at 1265.715 kb on - strand, within MMJJ_RS06865at 1265.783 kb on + strand, within MMJJ_RS06865at 1265.785 kb on - strand, within MMJJ_RS06865at 1265.788 kb on + strand, within MMJJ_RS06865at 1265.789 kb on - strand, within MMJJ_RS06865at 1265.885 kb on - strand, within MMJJ_RS06865at 1266.044 kb on - strandat 1266.054 kb on + strandat 1266.057 kb on - strandat 1266.057 kb on - strandat 1266.058 kb on + strandat 1266.247 kb on + strandat 1266.266 kb on + strand, within MMJJ_RS06870at 1266.273 kb on + strand, within MMJJ_RS06870at 1266.275 kb on + strand, within MMJJ_RS06870at 1266.322 kb on - strandat 1266.741 kb on + strand, within MMJJ_RS06875at 1266.751 kb on - strand, within MMJJ_RS06875at 1266.752 kb on + strand, within MMJJ_RS06875at 1266.888 kb on + strand, within MMJJ_RS06875at 1266.905 kb on - strand, within MMJJ_RS06875at 1266.909 kb on - strandat 1266.914 kb on - strandat 1266.959 kb on + strandat 1266.960 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM
remove
1,264,223 - -0.2
1,264,224 + -0.2
1,264,246 + -1.4
1,264,252 + -1.2
1,264,252 + +1.4
1,264,381 - MMJJ_RS06850 0.39 -1.9
1,264,627 - -0.2
1,264,649 - +0.7
1,264,650 + -2.7
1,264,666 - -0.9
1,264,670 + +0.4
1,264,683 - MMJJ_RS06855 0.12 -1.4
1,264,684 + +1.4
1,264,693 - MMJJ_RS06855 0.15 -0.9
1,264,760 + MMJJ_RS06855 0.37 +1.4
1,264,924 - -0.9
1,264,927 - -2.2
1,264,988 + MMJJ_RS06860 0.14 +0.4
1,264,997 - MMJJ_RS06860 0.18 -1.4
1,265,026 - MMJJ_RS06860 0.29 -0.6
1,265,066 - MMJJ_RS06860 0.45 -0.2
1,265,137 - MMJJ_RS06860 0.73 -1.8
1,265,140 - MMJJ_RS06860 0.75 -1.8
1,265,140 - MMJJ_RS06860 0.75 -2.9
1,265,140 - MMJJ_RS06860 0.75 +0.4
1,265,145 + +1.4
1,265,193 - -2.8
1,265,194 + -1.4
1,265,228 - -2.5
1,265,316 - MMJJ_RS06865 0.12 +0.4
1,265,375 + MMJJ_RS06865 0.19 +3.0
1,265,499 - MMJJ_RS06865 0.33 +1.4
1,265,715 - MMJJ_RS06865 0.58 +1.4
1,265,783 + MMJJ_RS06865 0.66 -0.6
1,265,785 - MMJJ_RS06865 0.67 -0.6
1,265,788 + MMJJ_RS06865 0.67 +1.4
1,265,789 - MMJJ_RS06865 0.67 +1.4
1,265,885 - MMJJ_RS06865 0.78 -0.2
1,266,044 - +0.4
1,266,054 + -1.6
1,266,057 - -1.4
1,266,057 - -0.6
1,266,058 + -0.6
1,266,247 + +1.4
1,266,266 + MMJJ_RS06870 0.83 -0.6
1,266,273 + MMJJ_RS06870 0.86 -0.2
1,266,275 + MMJJ_RS06870 0.87 -1.0
1,266,322 - -1.8
1,266,741 + MMJJ_RS06875 0.65 +1.4
1,266,751 - MMJJ_RS06875 0.66 -1.4
1,266,752 + MMJJ_RS06875 0.67 -0.2
1,266,888 + MMJJ_RS06875 0.87 -1.6
1,266,905 - MMJJ_RS06875 0.90 -1.0
1,266,909 - +1.4
1,266,914 - -0.2
1,266,959 + -1.4
1,266,960 - +0.4

Or see this region's nucleotide sequence