Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS06825

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,259,283	+		MMJJ_RS06815	0.59	-1.7
1,259,426	-				+1.4
1,259,491	-				-0.9
1,259,492	+				-2.0
1,259,583	-		MMJJ_RS06820	0.19	-1.2
1,259,584	+		MMJJ_RS06820	0.19	-0.7
1,259,593	-		MMJJ_RS06820	0.20	-1.7
1,259,594	+		MMJJ_RS06820	0.20	-1.5
1,259,712	-		MMJJ_RS06820	0.39	+0.1
1,259,741	+		MMJJ_RS06820	0.43	-0.3
1,259,764	+		MMJJ_RS06820	0.47	-2.5
1,259,822	+		MMJJ_RS06820	0.56	-2.8
1,260,052	+				-1.2
1,260,064	-				-0.2
1,260,108	-				-1.8
1,260,188	+				-1.3
1,260,188	+				-1.5
1,260,199	+		MMJJ_RS06825	0.10	+0.3
1,260,233	+		MMJJ_RS06825	0.15	-2.5
1,260,251	+		MMJJ_RS06825	0.17	-0.2
1,260,268	+		MMJJ_RS06825	0.19	-0.8
1,260,288	-		MMJJ_RS06825	0.22	-1.9
1,260,288	-		MMJJ_RS06825	0.22	-1.1
1,260,292	-		MMJJ_RS06825	0.23	-2.0
1,260,298	-		MMJJ_RS06825	0.23	-0.5
1,260,299	+		MMJJ_RS06825	0.23	-0.6
1,260,317	+		MMJJ_RS06825	0.26	-0.6
1,260,361	-		MMJJ_RS06825	0.32	-1.9
1,260,362	+		MMJJ_RS06825	0.32	+1.2
1,260,362	+		MMJJ_RS06825	0.32	-2.2
1,260,378	-		MMJJ_RS06825	0.34	+1.9
1,260,379	+		MMJJ_RS06825	0.34	-1.4
1,260,398	+		MMJJ_RS06825	0.36	+0.6
1,260,403	-		MMJJ_RS06825	0.37	-3.0
1,260,403	-		MMJJ_RS06825	0.37	-0.9
1,260,404	+		MMJJ_RS06825	0.37	+0.2
1,260,404	+		MMJJ_RS06825	0.37	-1.9
1,260,475	-		MMJJ_RS06825	0.47	+0.0
1,260,475	-		MMJJ_RS06825	0.47	-1.9
1,260,475	-		MMJJ_RS06825	0.47	-2.7
1,260,505	-		MMJJ_RS06825	0.51	-0.6
1,260,505	-		MMJJ_RS06825	0.51	+0.5
1,260,515	+		MMJJ_RS06825	0.52	-1.0
1,260,529	-		MMJJ_RS06825	0.54	-1.6
1,260,530	+		MMJJ_RS06825	0.54	-2.4
1,260,556	-		MMJJ_RS06825	0.57	-2.2
1,260,557	+		MMJJ_RS06825	0.57	-0.7
1,260,590	+		MMJJ_RS06825	0.62	-1.5
1,260,732	-		MMJJ_RS06825	0.81	-1.7
1,260,733	+		MMJJ_RS06825	0.81	-0.6
1,260,733	+		MMJJ_RS06825	0.81	-1.4
1,260,751	-		MMJJ_RS06825	0.83	-0.3
1,260,751	-		MMJJ_RS06825	0.83	-0.5
1,260,837	-				-1.3
1,260,874	-				-0.0
1,260,898	-				-1.2
1,260,898	-				-2.2
1,260,902	+				-0.9
1,260,931	+				-2.3
1,260,980	-		MMJJ_RS06830	0.16	-1.7
1,260,981	+		MMJJ_RS06830	0.17	-0.7
1,261,025	-		MMJJ_RS06830	0.26	-1.0
1,261,029	-		MMJJ_RS06830	0.27	-2.8
1,261,061	+		MMJJ_RS06830	0.33	-2.7
1,261,061	+		MMJJ_RS06830	0.33	+1.4
1,261,124	-		MMJJ_RS06830	0.46	-1.6
1,261,130	-		MMJJ_RS06830	0.47	+0.1
1,261,191	+		MMJJ_RS06830	0.60	-1.5
1,261,191	+		MMJJ_RS06830	0.60	+1.0
1,261,259	-		MMJJ_RS06830	0.74	-0.5
1,261,260	+		MMJJ_RS06830	0.74	-1.5
1,261,260	+		MMJJ_RS06830	0.74	-0.6
1,261,309	-		MMJJ_RS06830	0.84	+0.5
1,261,309	-		MMJJ_RS06830	0.84	-0.9
1,261,309	-		MMJJ_RS06830	0.84	-0.5
1,261,310	+		MMJJ_RS06830	0.84	-2.7
1,261,310	+		MMJJ_RS06830	0.84	-1.3
1,261,310	+		MMJJ_RS06830	0.84	+1.8
1,261,352	+				-1.3
1,261,440	-				-2.2
1,261,454	+				+3.0
1,261,454	+				-1.7
1,261,459	-				-0.2
1,261,459	-				-1.2
1,261,459	-				-0.5
1,261,459	-				-1.1
1,261,459	-				-0.9
1,261,460	+				-2.4
1,261,460	+				-1.6
1,261,460	+				-2.4
1,261,520	+		MMJJ_RS06835	0.12	-0.4
1,261,535	-		MMJJ_RS06835	0.13	+0.2
1,261,561	+		MMJJ_RS06835	0.15	-1.6
1,261,601	+		MMJJ_RS06835	0.19	-0.2
1,261,601	+		MMJJ_RS06835	0.19	-1.6
1,261,612	-		MMJJ_RS06835	0.20	-2.6
1,261,613	+		MMJJ_RS06835	0.20	-0.2
1,261,613	+		MMJJ_RS06835	0.20	-2.2
1,261,620	+		MMJJ_RS06835	0.20	-1.6
1,261,635	+		MMJJ_RS06835	0.22	-0.6
1,261,661	+		MMJJ_RS06835	0.24	-1.8
1,261,680	-		MMJJ_RS06835	0.26	-0.6
1,261,681	+		MMJJ_RS06835	0.26	-1.6
1,261,692	+		MMJJ_RS06835	0.27	-0.7
1,261,692	+		MMJJ_RS06835	0.27	+0.4
1,261,734	+		MMJJ_RS06835	0.30	-2.7
1,261,822	-		MMJJ_RS06835	0.38	-0.1
1,261,822	-		MMJJ_RS06835	0.38	-1.1
1,261,823	+		MMJJ_RS06835	0.38	-1.0
1,261,840	+		MMJJ_RS06835	0.39	-0.4
1,261,840	+		MMJJ_RS06835	0.39	-3.1
1,261,855	-		MMJJ_RS06835	0.40	-2.8
1,261,855	-		MMJJ_RS06835	0.40	-0.8