Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS06695

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,233,677	-		MMJJ_RS06685	0.84	-2.6
1,233,677	-		MMJJ_RS06685	0.84	-0.3
1,233,678	+		MMJJ_RS06685	0.84	-1.4
1,233,682	+		MMJJ_RS06685	0.84	-2.2
1,233,684	-		MMJJ_RS06685	0.84	-0.2
1,233,685	+		MMJJ_RS06685	0.84	-0.2
1,233,743	-		MMJJ_RS06685	0.89	-3.3
1,233,744	+		MMJJ_RS06685	0.89	+3.9
1,233,748	+		MMJJ_RS06685	0.89	+0.4
1,233,802	-				-2.1
1,233,802	-				-3.2
1,233,803	+				-0.2
1,233,815	+				+1.3
1,233,815	+				-0.1
1,233,815	+				+1.1
1,233,815	+				+2.3
1,233,822	-				+0.7
1,233,827	-				-2.3
1,233,827	-				+1.4
1,233,832	-				-0.9
1,233,851	+				+1.9
1,233,851	+				+1.8
1,233,857	+				+6.3
1,233,861	-				-0.2
1,233,861	-				+1.8
1,233,862	+				+0.6
1,233,865	-				+1.4
1,233,865	-				+2.5
1,233,866	+				-0.6
1,233,866	+				-0.8
1,233,866	+				+2.1
1,233,866	+				-3.6
1,233,908	+				+0.8
1,233,924	-				+3.1
1,233,924	-				-0.5
1,233,926	-				-1.8
1,233,926	-				-1.3
1,233,927	+				+1.7
1,233,927	+				-1.8
1,233,927	+				-2.3
1,233,931	+				-0.6
1,233,931	+				-0.0
1,233,931	+				+1.4
1,233,931	+				-0.2
1,233,931	+				+0.5
1,233,942	+				+4.2
1,233,942	+				-2.0
1,233,942	+				-0.9
1,233,943	-				-0.2
1,233,943	-				-1.2
1,233,944	+				+0.9
1,233,944	+				-1.2
1,233,944	+				-2.2
1,233,944	+				+0.6
1,233,944	+				+1.0
1,233,944	+				-1.6
1,233,944	+				+0.3
1,233,944	+				+3.4
1,233,944	+				-1.4
1,233,955	+				+3.6
1,233,964	+				-0.2
1,233,964	+				+1.5
1,233,964	+				-1.2
1,234,058	-		MMJJ_RS06690	0.10	-0.2
1,234,123	+		MMJJ_RS06690	0.22	+0.4
1,234,551	-				-0.1
1,234,566	-				-1.8
1,234,578	+				-0.6
1,234,952	+		MMJJ_RS06695	0.28	-0.2
1,235,146	+		MMJJ_RS06695	0.43	-0.6
1,235,172	-		MMJJ_RS06695	0.45	-0.9
1,235,281	-		MMJJ_RS06695	0.53	-0.8
1,235,364	+				+1.4
1,235,382	+		MMJJ_RS06695	0.61	-1.9
1,235,406	-		MMJJ_RS06695	0.63	-0.2
1,235,497	+		MMJJ_RS06695	0.70	-1.2
1,235,746	+				-0.2
1,235,769	+				+1.4
1,235,851	-				+1.4
1,235,852	+				+2.9
1,235,852	+				-0.8
1,235,896	-				-0.2
1,235,901	-				-0.6
1,236,086	-		MMJJ_RS06700	0.28	-1.2
1,236,104	-		MMJJ_RS06700	0.30	+3.0
1,236,107	-		MMJJ_RS06700	0.30	-0.2
1,236,107	-		MMJJ_RS06700	0.30	+2.3
1,236,108	+		MMJJ_RS06700	0.30	+1.8
1,236,204	+		MMJJ_RS06700	0.43	+0.4
1,236,211	+		MMJJ_RS06700	0.44	-0.6
1,236,223	-		MMJJ_RS06700	0.45	-0.9
1,236,253	-		MMJJ_RS06700	0.49	+1.4
1,236,254	+		MMJJ_RS06700	0.49	-2.5
1,236,339	-				+0.4
1,236,340	+		MMJJ_RS06700	0.61	-0.2
1,236,340	+		MMJJ_RS06700	0.61	-0.6
1,236,528	-		MMJJ_RS06700	0.85	+1.4
1,236,528	-		MMJJ_RS06700	0.85	-0.9
1,236,636	-				+0.4
1,236,636	-				+0.4
1,236,660	+				-1.8
1,236,671	-				-0.4
1,236,672	+				+0.3
1,236,693	-				+1.3
1,236,694	+				-0.1
1,236,694	+				+2.2
1,236,697	-				+0.9
1,236,697	-				-3.6
1,236,699	-				-0.9
1,236,702	-				-1.6
1,236,706	-				-2.5
1,236,709	-				-2.8
1,236,709	-				-1.2
1,236,709	-				+1.0
1,236,709	-				+1.4
1,236,710	+				-1.4
1,236,710	+				-0.6
1,236,713	-				-2.2
1,236,713	-				-2.6
1,236,713	-				-1.6
1,236,713	-				-1.9
1,236,713	-				-1.8
1,236,713	-				-0.2
1,236,713	-				-1.2
1,236,714	+				+0.3
1,236,714	+				-3.5
1,236,714	+				-0.9
1,236,717	-				-0.2
1,236,717	-				-1.4
1,236,720	-				-0.6
1,236,720	-				+0.6
1,236,756	+				+1.4