Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS06675

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,229,994	-		MMJJ_RS06670	0.49	-0.9
1,230,779	-				+0.4
1,230,780	+				+1.4
1,230,781	-				-0.3
1,230,781	-				-2.0
1,230,787	-				-2.1
1,230,789	-				-3.1
1,230,789	-				-2.6
1,230,805	+				+0.5
1,230,805	+				-0.4
1,230,807	-				+4.3
1,230,807	-				-1.1
1,230,808	+				-1.8
1,230,809	-				+0.4
1,230,809	-				-0.9
1,230,809	-				-0.6
1,230,810	+				-2.5
1,230,814	-				-1.1
1,230,814	-				-0.0
1,230,814	-				+1.4
1,230,817	+				+4.2
1,230,843	-				+3.0
1,230,844	+				-1.6
1,230,870	-				-0.3
1,230,870	-				-2.5
1,230,871	+				+2.4
1,230,873	-				+2.7
1,230,874	+				-2.2
1,230,934	-				+3.4
1,230,946	+		MMJJ_RS06675	0.11	+2.2
1,230,976	+		MMJJ_RS06675	0.14	+4.1
1,231,008	-		MMJJ_RS06675	0.17	+1.8
1,231,011	-		MMJJ_RS06675	0.17	-0.5
1,231,012	+		MMJJ_RS06675	0.17	+4.0
1,231,029	-		MMJJ_RS06675	0.19	+3.6
1,231,096	-		MMJJ_RS06675	0.26	+4.1
1,231,097	+				-0.2
1,231,137	-		MMJJ_RS06675	0.30	-0.1
1,231,188	-		MMJJ_RS06675	0.35	+0.0
1,231,188	-		MMJJ_RS06675	0.35	+0.3
1,231,188	-		MMJJ_RS06675	0.35	-2.3
1,231,189	+		MMJJ_RS06675	0.35	+4.4
1,231,251	-		MMJJ_RS06675	0.41	+0.1
1,231,251	-		MMJJ_RS06675	0.41	-1.2
1,231,254	+		MMJJ_RS06675	0.42	+2.1
1,231,310	-		MMJJ_RS06675	0.47	+2.8
1,231,318	-		MMJJ_RS06675	0.48	+1.0
1,231,318	-		MMJJ_RS06675	0.48	-2.5
1,231,318	-		MMJJ_RS06675	0.48	+2.8
1,231,333	-		MMJJ_RS06675	0.50	-1.8
1,231,352	-		MMJJ_RS06675	0.51	-1.9
1,231,353	+				+1.4
1,231,392	+		MMJJ_RS06675	0.55	+0.1
1,231,396	+		MMJJ_RS06675	0.56	+5.0
1,231,396	+		MMJJ_RS06675	0.56	-1.7
1,231,418	-		MMJJ_RS06675	0.58	-3.1
1,231,418	-		MMJJ_RS06675	0.58	+3.8
1,231,418	-		MMJJ_RS06675	0.58	+0.4
1,231,419	+		MMJJ_RS06675	0.58	+5.0
1,231,419	+		MMJJ_RS06675	0.58	-2.6
1,231,419	+		MMJJ_RS06675	0.58	-1.4
1,231,472	-		MMJJ_RS06675	0.63	+1.0
1,231,504	+		MMJJ_RS06675	0.67	+0.3
1,231,601	-		MMJJ_RS06675	0.76	+3.1
1,231,601	-		MMJJ_RS06675	0.76	-1.6
1,231,602	+		MMJJ_RS06675	0.76	-1.8
1,231,603	-		MMJJ_RS06675	0.77	+1.5
1,231,603	-		MMJJ_RS06675	0.77	+2.1
1,231,603	-		MMJJ_RS06675	0.77	+0.3
1,231,603	-		MMJJ_RS06675	0.77	-0.9
1,231,604	+		MMJJ_RS06675	0.77	+4.1
1,231,604	+		MMJJ_RS06675	0.77	-0.2
1,231,604	+		MMJJ_RS06675	0.77	+2.8
1,231,604	+		MMJJ_RS06675	0.77	-1.4
1,231,604	+		MMJJ_RS06675	0.77	+0.4
1,231,643	+		MMJJ_RS06675	0.81	+3.3
1,231,676	-		MMJJ_RS06675	0.84	-0.7
1,231,676	-		MMJJ_RS06675	0.84	-0.0
1,231,677	+		MMJJ_RS06675	0.84	+1.7
1,231,677	+		MMJJ_RS06675	0.84	-1.3
1,231,684	-				+1.4
1,231,688	-		MMJJ_RS06675	0.85	+3.5
1,231,689	+		MMJJ_RS06675	0.85	-2.8
1,231,689	+		MMJJ_RS06675	0.85	-3.5
1,231,772	-				+2.8
1,231,846	-				+2.4
1,231,846	-				-1.9
1,231,857	+				+2.9
1,231,874	+				+3.8
1,231,876	-				-2.0
1,231,942	-		MMJJ_RS06680	0.15	+2.7
1,231,964	-		MMJJ_RS06680	0.19	+1.5
1,232,006	-		MMJJ_RS06680	0.26	-0.5
1,232,012	-		MMJJ_RS06680	0.27	-0.8
1,232,013	+		MMJJ_RS06680	0.27	-0.6
1,232,038	-		MMJJ_RS06680	0.31	-3.1
1,232,039	+		MMJJ_RS06680	0.31	-1.4
1,232,039	+		MMJJ_RS06680	0.31	-0.6
1,232,075	+		MMJJ_RS06680	0.37	-1.1
1,232,085	-		MMJJ_RS06680	0.39	-0.5
1,232,114	-		MMJJ_RS06680	0.44	+2.2
1,232,115	+		MMJJ_RS06680	0.44	-2.8
1,232,135	-		MMJJ_RS06680	0.47	-1.6
1,232,135	-		MMJJ_RS06680	0.47	-0.6
1,232,136	+		MMJJ_RS06680	0.47	-3.6
1,232,156	-		MMJJ_RS06680	0.51	-1.2
1,232,175	-		MMJJ_RS06680	0.54	+1.7
1,232,176	+		MMJJ_RS06680	0.54	+3.7
1,232,176	+		MMJJ_RS06680	0.54	-1.3
1,232,176	+		MMJJ_RS06680	0.54	-0.6
1,232,392	-				+3.0
1,232,394	-				-1.6
1,232,395	+				+2.5
1,232,484	-				-2.2
1,232,484	-				+0.5
1,232,485	+				-0.2
1,232,504	+				+3.5
1,232,508	-				+0.2
1,232,509	+				-0.1
1,232,555	-				-0.9
1,232,566	-				+0.4
1,232,566	-				-0.6
1,232,566	-				-1.8
1,232,566	-				+0.2
1,232,566	-				+0.9
1,232,567	+				+1.4
1,232,567	+				-0.9
1,232,585	+				-1.2
1,232,596	-				-1.9
1,232,596	-				-0.9
1,232,596	-				+1.7
1,232,615	-				-1.3
1,232,629	+				-1.2
1,232,680	-				+3.3
1,232,688	-		MMJJ_RS06685	0.10	+1.5
1,232,689	+		MMJJ_RS06685	0.10	+1.1
1,232,725	-		MMJJ_RS06685	0.13	-2.0
1,232,748	+		MMJJ_RS06685	0.14	+5.2
1,232,757	-		MMJJ_RS06685	0.15	+0.4
1,232,771	+		MMJJ_RS06685	0.16	-2.7
1,232,771	+		MMJJ_RS06685	0.16	-2.6
1,232,775	-		MMJJ_RS06685	0.16	-2.0
1,232,775	-		MMJJ_RS06685	0.16	-0.6
1,232,776	+		MMJJ_RS06685	0.17	-1.4
1,232,827	-		MMJJ_RS06685	0.20	-0.8