Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS06660

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,227,043	-		MMJJ_RS06650	0.67	+2.4
1,227,080	-		MMJJ_RS06650	0.71	+5.6
1,227,085	+		MMJJ_RS06650	0.71	-1.1
1,227,089	-		MMJJ_RS06650	0.71	+1.9
1,227,089	-		MMJJ_RS06650	0.71	+2.0
1,227,089	-		MMJJ_RS06650	0.71	-2.1
1,227,089	-		MMJJ_RS06650	0.71	+3.3
1,227,090	+		MMJJ_RS06650	0.71	-0.9
1,227,090	+		MMJJ_RS06650	0.71	+1.6
1,227,104	-		MMJJ_RS06650	0.73	+0.8
1,227,104	-		MMJJ_RS06650	0.73	-0.9
1,227,104	-		MMJJ_RS06650	0.73	+1.9
1,227,140	-		MMJJ_RS06650	0.76	-2.0
1,227,140	-		MMJJ_RS06650	0.76	-1.9
1,227,141	+		MMJJ_RS06650	0.76	-3.0
1,227,147	+		MMJJ_RS06650	0.77	+2.7
1,227,147	+		MMJJ_RS06650	0.77	-0.9
1,227,147	+		MMJJ_RS06650	0.77	-1.4
1,227,147	+		MMJJ_RS06650	0.77	+0.9
1,227,147	+		MMJJ_RS06650	0.77	+1.9
1,227,164	-		MMJJ_RS06650	0.78	+2.0
1,227,180	-		MMJJ_RS06650	0.80	+3.1
1,227,180	-		MMJJ_RS06650	0.80	-0.3
1,227,180	-		MMJJ_RS06650	0.80	-2.0
1,227,219	+		MMJJ_RS06650	0.83	-1.4
1,227,231	-		MMJJ_RS06650	0.84	+3.2
1,227,231	-		MMJJ_RS06650	0.84	+1.1
1,227,288	-		MMJJ_RS06650	0.90	-2.4
1,227,291	-		MMJJ_RS06650	0.90	-1.9
1,227,312	-				-0.2
1,227,313	+				-1.3
1,227,314	-				+4.6
1,227,392	+				+0.8
1,227,392	+				+1.1
1,227,393	-				+3.4
1,227,394	+				-1.0
1,227,399	+				-1.7
1,227,399	+				+2.0
1,227,399	+				+5.1
1,227,432	-				-1.1
1,227,439	-				+1.7
1,227,440	+				+0.7
1,227,450	-				-1.2
1,227,451	+				+2.1
1,227,451	+				+0.6
1,227,451	+				+4.0
1,227,451	+				-0.4
1,227,451	+				+0.3
1,227,492	-				+0.9
1,227,543	+		MMJJ_RS06655	0.18	+5.1
1,227,561	+		MMJJ_RS06655	0.21	+0.1
1,227,561	+		MMJJ_RS06655	0.21	-1.3
1,227,576	-		MMJJ_RS06655	0.24	+1.8
1,227,577	+		MMJJ_RS06655	0.25	+2.3
1,227,577	+		MMJJ_RS06655	0.25	+0.8
1,227,577	+		MMJJ_RS06655	0.25	-2.3
1,227,580	+		MMJJ_RS06655	0.25	+0.9
1,227,586	-		MMJJ_RS06655	0.26	+1.1
1,227,586	-		MMJJ_RS06655	0.26	+1.6
1,227,589	+		MMJJ_RS06655	0.27	+1.7
1,227,637	+		MMJJ_RS06655	0.36	+2.4
1,227,682	+		MMJJ_RS06655	0.45	+1.3
1,227,686	-		MMJJ_RS06655	0.46	+1.4
1,227,687	+		MMJJ_RS06655	0.46	+1.2
1,227,687	+		MMJJ_RS06655	0.46	-0.6
1,227,713	-				+0.1
1,227,723	+		MMJJ_RS06655	0.53	+0.0
1,227,799	+		MMJJ_RS06655	0.68	+2.3
1,227,812	-		MMJJ_RS06655	0.70	-0.1
1,227,814	-		MMJJ_RS06655	0.71	+1.0
1,227,814	-		MMJJ_RS06655	0.71	+3.4
1,227,814	-		MMJJ_RS06655	0.71	+1.8
1,227,858	+		MMJJ_RS06655	0.79	-1.8
1,227,861	+		MMJJ_RS06655	0.80	-2.1
1,227,864	-		MMJJ_RS06655	0.81	-2.7
1,227,884	-		MMJJ_RS06655	0.84	+0.4
1,227,885	+		MMJJ_RS06655	0.85	+0.0
1,227,891	+		MMJJ_RS06655	0.86	+0.6
1,227,891	+		MMJJ_RS06655	0.86	+1.3
1,227,907	+		MMJJ_RS06655	0.89	-2.0
1,227,972	+				-1.4
1,227,994	-				-1.9
1,227,994	-				-0.7
1,227,995	+				-3.0
1,227,995	+				-2.9
1,228,005	-				-2.7
1,228,019	+				+0.9
1,228,064	+		MMJJ_RS06660	0.12	-0.6
1,228,133	-		MMJJ_RS06660	0.21	-2.5
1,228,134	+		MMJJ_RS06660	0.21	+0.3
1,228,164	-		MMJJ_RS06660	0.25	-1.2
1,228,169	+		MMJJ_RS06660	0.25	+0.8
1,228,169	+		MMJJ_RS06660	0.25	-1.4
1,228,169	+		MMJJ_RS06660	0.25	+0.1
1,228,201	-		MMJJ_RS06660	0.30	-2.3
1,228,312	-		MMJJ_RS06660	0.44	-1.0
1,228,410	-		MMJJ_RS06660	0.56	-2.2
1,228,510	-		MMJJ_RS06660	0.69	-3.0
1,228,510	-		MMJJ_RS06660	0.69	-2.5
1,228,516	+		MMJJ_RS06660	0.70	-2.2
1,228,522	-		MMJJ_RS06660	0.70	-0.6
1,228,541	+		MMJJ_RS06660	0.73	-0.7
1,228,549	+		MMJJ_RS06660	0.74	-1.6
1,228,567	-		MMJJ_RS06660	0.76	-2.7
1,228,587	+		MMJJ_RS06660	0.79	-1.4
1,228,601	-		MMJJ_RS06660	0.81	-1.8
1,228,626	-		MMJJ_RS06660	0.84	-3.2
1,228,642	-		MMJJ_RS06660	0.86	-0.6
1,228,643	+		MMJJ_RS06660	0.86	-3.1
1,228,643	+		MMJJ_RS06660	0.86	-2.8
1,228,649	-		MMJJ_RS06660	0.87	-2.8
1,228,766	-				-0.9
1,228,767	+				-2.6
1,228,797	-		MMJJ_RS06665	0.10	-0.9
1,228,932	-		MMJJ_RS06665	0.38	-3.0
1,228,933	+		MMJJ_RS06665	0.38	-3.0
1,228,981	+		MMJJ_RS06665	0.48	-1.6
1,228,998	-		MMJJ_RS06665	0.52	-0.6
1,229,035	+		MMJJ_RS06665	0.60	+0.4
1,229,036	-		MMJJ_RS06665	0.60	-2.2
1,229,036	-		MMJJ_RS06665	0.60	-2.3
1,229,060	-		MMJJ_RS06665	0.65	-1.6
1,229,109	-		MMJJ_RS06665	0.75	-2.9
1,229,157	-		MMJJ_RS06665	0.85	-0.9
1,229,177	-		MMJJ_RS06665	0.89	-1.8
1,229,178	+		MMJJ_RS06665	0.89	-1.2
1,229,197	-				-3.4
1,229,213	-				-1.4
1,229,254	-				-1.0
1,229,501	+				+0.4
1,229,655	+				-0.6