Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS06635

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,224,132	+		MMJJ_RS06625	0.84	+1.5
1,224,142	+		MMJJ_RS06625	0.85	+2.5
1,224,271	+				-2.1
1,224,271	+				-2.3
1,224,306	-				-1.1
1,224,332	+				+1.5
1,224,349	-		MMJJ_RS06630	0.11	-2.1
1,224,410	-		MMJJ_RS06630	0.23	+0.2
1,224,420	-		MMJJ_RS06630	0.25	-0.9
1,224,451	-		MMJJ_RS06630	0.31	+0.4
1,224,451	-		MMJJ_RS06630	0.31	-2.5
1,224,452	+		MMJJ_RS06630	0.31	+1.7
1,224,452	+		MMJJ_RS06630	0.31	-1.4
1,224,459	-		MMJJ_RS06630	0.32	-3.3
1,224,459	-		MMJJ_RS06630	0.32	-1.8
1,224,459	-		MMJJ_RS06630	0.32	-0.3
1,224,459	-		MMJJ_RS06630	0.32	+0.7
1,224,459	-		MMJJ_RS06630	0.32	-0.5
1,224,460	+		MMJJ_RS06630	0.33	-0.3
1,224,460	+		MMJJ_RS06630	0.33	-0.5
1,224,460	+		MMJJ_RS06630	0.33	+1.0
1,224,495	-		MMJJ_RS06630	0.39	+0.2
1,224,495	-		MMJJ_RS06630	0.39	-0.2
1,224,495	-		MMJJ_RS06630	0.39	-0.5
1,224,564	-		MMJJ_RS06630	0.53	-1.2
1,224,565	+		MMJJ_RS06630	0.53	-1.2
1,224,566	-		MMJJ_RS06630	0.54	+2.7
1,224,566	-		MMJJ_RS06630	0.54	-2.3
1,224,566	-		MMJJ_RS06630	0.54	+1.1
1,224,566	-		MMJJ_RS06630	0.54	-1.0
1,224,566	-		MMJJ_RS06630	0.54	+0.7
1,224,566	-		MMJJ_RS06630	0.54	+0.6
1,224,566	-		MMJJ_RS06630	0.54	-0.1
1,224,566	-		MMJJ_RS06630	0.54	-0.5
1,224,566	-		MMJJ_RS06630	0.54	-0.3
1,224,566	-		MMJJ_RS06630	0.54	+1.4
1,224,566	-		MMJJ_RS06630	0.54	-2.1
1,224,566	-		MMJJ_RS06630	0.54	-0.8
1,224,566	-		MMJJ_RS06630	0.54	+2.2
1,224,566	-		MMJJ_RS06630	0.54	+0.3
1,224,567	+		MMJJ_RS06630	0.54	+0.8
1,224,567	+		MMJJ_RS06630	0.54	+2.8
1,224,567	+		MMJJ_RS06630	0.54	-1.7
1,224,567	+		MMJJ_RS06630	0.54	-3.8
1,224,567	+		MMJJ_RS06630	0.54	-2.0
1,224,567	+		MMJJ_RS06630	0.54	+1.5
1,224,567	+		MMJJ_RS06630	0.54	-2.1
1,224,567	+		MMJJ_RS06630	0.54	-1.1
1,224,567	+		MMJJ_RS06630	0.54	+3.0
1,224,571	+		MMJJ_RS06630	0.55	+0.7
1,224,632	+		MMJJ_RS06630	0.67	+1.3
1,224,632	+		MMJJ_RS06630	0.67	+0.3
1,224,663	-		MMJJ_RS06630	0.73	+1.0
1,224,664	+		MMJJ_RS06630	0.73	-1.9
1,224,701	+		MMJJ_RS06630	0.80	-1.8
1,224,704	+		MMJJ_RS06630	0.81	+0.7
1,224,731	+		MMJJ_RS06630	0.86	+0.1
1,224,731	+		MMJJ_RS06630	0.86	-1.2
1,224,773	+				-0.1
1,224,790	-				-0.6
1,224,790	-				-0.2
1,224,803	-				-4.0
1,224,804	+				-1.1
1,224,836	+				-0.4
1,224,916	-		MMJJ_RS06635	0.24	+1.5
1,224,916	-		MMJJ_RS06635	0.24	-1.3
1,224,917	+		MMJJ_RS06635	0.24	-2.9
1,224,917	+		MMJJ_RS06635	0.24	+0.2
1,224,922	-		MMJJ_RS06635	0.25	-2.1
1,224,922	-		MMJJ_RS06635	0.25	-2.1
1,224,922	-		MMJJ_RS06635	0.25	-2.5
1,224,922	-		MMJJ_RS06635	0.25	-0.5
1,224,922	-		MMJJ_RS06635	0.25	-1.2
1,224,922	-		MMJJ_RS06635	0.25	-2.1
1,224,922	-		MMJJ_RS06635	0.25	-1.2
1,224,922	-		MMJJ_RS06635	0.25	-2.0
1,224,923	+		MMJJ_RS06635	0.25	+0.5
1,224,923	+		MMJJ_RS06635	0.25	-0.6
1,224,923	+		MMJJ_RS06635	0.25	+2.1
1,224,923	+		MMJJ_RS06635	0.25	-1.2
1,224,923	+		MMJJ_RS06635	0.25	-1.9
1,224,923	+		MMJJ_RS06635	0.25	+3.6
1,224,923	+		MMJJ_RS06635	0.25	-1.4
1,224,923	+		MMJJ_RS06635	0.25	-2.0
1,224,950	+		MMJJ_RS06635	0.32	-1.0
1,224,954	-		MMJJ_RS06635	0.33	+0.5
1,224,954	-		MMJJ_RS06635	0.33	+0.5
1,224,954	-		MMJJ_RS06635	0.33	-3.0
1,224,955	+		MMJJ_RS06635	0.33	-1.1
1,224,955	+		MMJJ_RS06635	0.33	-1.7
1,224,955	+		MMJJ_RS06635	0.33	+1.1
1,224,988	-		MMJJ_RS06635	0.41	-1.3
1,224,993	-		MMJJ_RS06635	0.42	-2.0
1,224,993	-		MMJJ_RS06635	0.42	-0.0
1,224,994	+		MMJJ_RS06635	0.42	-1.2
1,224,997	+		MMJJ_RS06635	0.43	-1.1
1,224,999	-		MMJJ_RS06635	0.43	-1.1
1,224,999	-		MMJJ_RS06635	0.43	+2.2
1,224,999	-		MMJJ_RS06635	0.43	-2.1
1,225,000	+		MMJJ_RS06635	0.44	-1.5
1,225,000	+		MMJJ_RS06635	0.44	-1.3
1,225,000	+		MMJJ_RS06635	0.44	-1.9
1,225,000	+		MMJJ_RS06635	0.44	-1.1
1,225,000	+		MMJJ_RS06635	0.44	-2.0
1,225,029	-		MMJJ_RS06635	0.51	-1.4
1,225,030	+		MMJJ_RS06635	0.51	-2.9
1,225,041	-		MMJJ_RS06635	0.53	-2.0
1,225,041	-		MMJJ_RS06635	0.53	-1.9
1,225,059	-		MMJJ_RS06635	0.58	+1.5
1,225,069	-		MMJJ_RS06635	0.60	-1.4
1,225,070	+		MMJJ_RS06635	0.60	-0.9
1,225,090	+		MMJJ_RS06635	0.65	-0.1
1,225,105	-		MMJJ_RS06635	0.69	-0.3
1,225,105	-		MMJJ_RS06635	0.69	+0.1
1,225,106	+		MMJJ_RS06635	0.69	-1.6
1,225,125	-		MMJJ_RS06635	0.74	-0.9
1,225,125	-		MMJJ_RS06635	0.74	-3.8
1,225,125	-		MMJJ_RS06635	0.74	-2.9
1,225,126	+		MMJJ_RS06635	0.74	-0.7
1,225,126	+		MMJJ_RS06635	0.74	+0.8
1,225,126	+		MMJJ_RS06635	0.74	-0.2
1,225,137	-		MMJJ_RS06635	0.76	-2.8
1,225,137	-		MMJJ_RS06635	0.76	-0.1
1,225,137	-		MMJJ_RS06635	0.76	-0.5
1,225,138	+		MMJJ_RS06635	0.77	-3.2
1,225,138	+		MMJJ_RS06635	0.77	-0.4
1,225,138	+		MMJJ_RS06635	0.77	-2.6
1,225,144	-		MMJJ_RS06635	0.78	-1.8
1,225,163	-		MMJJ_RS06635	0.83	-1.4
1,225,171	-		MMJJ_RS06635	0.85	-2.8
1,225,260	-				+1.4
1,225,287	-				-0.7
1,225,293	-				-1.3
1,225,357	+		MMJJ_RS06640	0.23	+1.7
1,225,377	-		MMJJ_RS06640	0.27	+1.1
1,225,377	-		MMJJ_RS06640	0.27	+0.4
1,225,377	-				+1.4
1,225,378	+		MMJJ_RS06640	0.27	-1.7
1,225,378	+		MMJJ_RS06640	0.27	+1.8
1,225,378	+		MMJJ_RS06640	0.27	+0.5
1,225,386	-		MMJJ_RS06640	0.29	-1.0
1,225,386	-		MMJJ_RS06640	0.29	-0.4
1,225,386	-		MMJJ_RS06640	0.29	-0.1
1,225,391	-		MMJJ_RS06640	0.30	+2.2
1,225,391	-		MMJJ_RS06640	0.30	-1.0
1,225,391	-		MMJJ_RS06640	0.30	+0.5
1,225,392	+		MMJJ_RS06640	0.30	-0.9
1,225,392	+		MMJJ_RS06640	0.30	+3.3
1,225,403	-		MMJJ_RS06640	0.32	-1.6
1,225,404	+		MMJJ_RS06640	0.32	-0.3
1,225,404	+		MMJJ_RS06640	0.32	-2.3
1,225,444	+		MMJJ_RS06640	0.40	+0.0
1,225,448	+		MMJJ_RS06640	0.41	+0.2
1,225,463	-		MMJJ_RS06640	0.44	+3.4
1,225,463	-		MMJJ_RS06640	0.44	-0.1
1,225,463	-		MMJJ_RS06640	0.44	+0.6
1,225,464	+		MMJJ_RS06640	0.45	+1.0
1,225,464	+		MMJJ_RS06640	0.45	-0.9
1,225,464	+		MMJJ_RS06640	0.45	-1.6
1,225,524	-		MMJJ_RS06640	0.57	-0.6
1,225,524	-		MMJJ_RS06640	0.57	+2.4
1,225,524	-		MMJJ_RS06640	0.57	-1.4
1,225,524	-		MMJJ_RS06640	0.57	+1.7
1,225,550	-		MMJJ_RS06640	0.62	-1.6
1,225,552	-		MMJJ_RS06640	0.62	-0.1
1,225,552	-		MMJJ_RS06640	0.62	+0.4
1,225,553	+		MMJJ_RS06640	0.63	-1.3
1,225,623	-		MMJJ_RS06640	0.77	-1.6
1,225,624	+		MMJJ_RS06640	0.77	+1.8
1,225,707	+				+3.1
1,225,728	-				-2.0
1,225,728	-				-2.0
1,225,730	-				-1.7
1,225,770	-				-0.7
1,225,771	+				+2.4
1,225,774	-				-1.0
1,226,117	+				-0.6
1,226,125	+				-1.7
1,226,127	+				-0.1
1,226,134	-				+0.4
1,226,134	-				-0.1
1,226,139	-				+4.5
1,226,140	+				+4.4
1,226,144	-				-0.2
1,226,148	+				-2.2
1,226,148	+				-1.7
1,226,154	-				+0.4
1,226,155	+				-0.6
1,226,158	-				+0.6
1,226,158	-				+0.2
1,226,160	-				-0.6
1,226,161	+				-2.2
1,226,161	+				+1.4
1,226,163	-				+1.4
1,226,163	-				-0.1
1,226,188	-				+1.2
1,226,188	-				-3.3
1,226,188	-				-0.7
1,226,196	+				-1.6
1,226,198	-				+3.0
1,226,199	+				+3.7
1,226,199	+				+0.6
1,226,201	+				-0.1
1,226,201	+				+3.7
1,226,201	+				-2.0
1,226,202	-				+3.8
1,226,202	-				-1.6
1,226,203	+				+1.8
1,226,207	-				-3.2
1,226,221	-				-0.1
1,226,221	-				+0.5
1,226,222	+				-2.8
1,226,225	-				+1.8