Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS06535

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,205,141	-		MMJJ_RS06530	0.38	-0.5
1,205,238	+		MMJJ_RS06530	0.47	-0.5
1,205,311	-		MMJJ_RS06530	0.53	-0.1
1,205,349	+		MMJJ_RS06530	0.56	-0.5
1,205,694	+		MMJJ_RS06530	0.86	+0.5
1,205,837	-				-2.8
1,205,837	-				-2.5
1,205,837	-				+0.3
1,205,838	+				+1.1
1,205,838	+				+2.1
1,205,842	-				+0.0
1,205,842	-				+1.5
1,205,842	-				-3.5
1,205,842	-				-0.3
1,205,842	-				+1.9
1,205,842	-				-0.9
1,205,843	+				-2.6
1,205,843	+				+1.0
1,205,846	-				+2.5
1,205,846	-				+3.4
1,205,846	-				+0.3
1,205,846	-				+0.9
1,205,846	-				+3.3
1,205,846	-				-0.5
1,205,847	+				-3.1
1,205,847	+				+2.2
1,205,847	+				+2.9
1,205,847	+				-0.7
1,205,847	+				-0.5
1,205,850	+				+1.3
1,205,857	-				+1.3
1,205,858	+				+2.5
1,205,858	+				+1.0
1,205,862	+				+3.1
1,205,862	+				+3.3
1,205,867	-				+2.1
1,205,867	-				-0.5
1,205,868	+				-2.7
1,205,868	+				+4.6
1,205,881	+				+3.3
1,205,886	+				+1.1
1,205,890	+				+0.3
1,205,895	+				+0.2
1,205,951	-				-1.9
1,205,951	-				+3.3
1,205,951	-				+1.1
1,205,951	-				+3.7
1,205,951	-				-2.9
1,205,951	-				+2.6
1,205,951	-				+5.7
1,205,952	+				+1.0
1,205,952	+				-2.1
1,205,952	+				+3.8
1,205,952	+				+2.0
1,205,952	+				-2.7
1,205,952	+				+1.9
1,205,965	+				-2.5
1,205,965	+				+3.0
1,205,972	-				+3.7
1,205,982	-				+1.2
1,205,989	-				+4.3
1,205,997	+				-1.1
1,206,046	-		MMJJ_RS06535	0.13	+4.5
1,206,046	-		MMJJ_RS06535	0.13	-1.5
1,206,068	+		MMJJ_RS06535	0.15	+1.2
1,206,068	+		MMJJ_RS06535	0.15	+2.6
1,206,071	-		MMJJ_RS06535	0.16	+2.6
1,206,072	+		MMJJ_RS06535	0.16	+1.0
1,206,072	+		MMJJ_RS06535	0.16	+2.4
1,206,082	-		MMJJ_RS06535	0.17	-1.1
1,206,082	-		MMJJ_RS06535	0.17	-1.3
1,206,107	+		MMJJ_RS06535	0.19	+5.0
1,206,188	-		MMJJ_RS06535	0.27	-0.0
1,206,232	-		MMJJ_RS06535	0.31	+2.4
1,206,232	-		MMJJ_RS06535	0.31	-0.4
1,206,232	-		MMJJ_RS06535	0.31	+6.3
1,206,304	+		MMJJ_RS06535	0.38	+2.0
1,206,309	-		MMJJ_RS06535	0.39	-1.7
1,206,309	-		MMJJ_RS06535	0.39	+3.3
1,206,336	+		MMJJ_RS06535	0.42	+1.5
1,206,339	+		MMJJ_RS06535	0.42	+1.5
1,206,339	+		MMJJ_RS06535	0.42	+3.7
1,206,342	+		MMJJ_RS06535	0.42	+4.3
1,206,385	+		MMJJ_RS06535	0.46	-1.3
1,206,411	+		MMJJ_RS06535	0.49	+1.4
1,206,421	+		MMJJ_RS06535	0.50	+3.3
1,206,421	+		MMJJ_RS06535	0.50	+1.6
1,206,427	-		MMJJ_RS06535	0.50	-2.1
1,206,427	-		MMJJ_RS06535	0.50	-0.8
1,206,427	-		MMJJ_RS06535	0.50	+3.9
1,206,427	-		MMJJ_RS06535	0.50	-0.1
1,206,427	-		MMJJ_RS06535	0.50	-2.5
1,206,427	-		MMJJ_RS06535	0.50	+4.1
1,206,428	+		MMJJ_RS06535	0.51	+3.3
1,206,428	+		MMJJ_RS06535	0.51	+2.3
1,206,428	+		MMJJ_RS06535	0.51	-2.8
1,206,428	+		MMJJ_RS06535	0.51	+1.5
1,206,428	+		MMJJ_RS06535	0.51	-2.8
1,206,428	+		MMJJ_RS06535	0.51	+4.0
1,206,428	+		MMJJ_RS06535	0.51	+3.5
1,206,462	+		MMJJ_RS06535	0.54	-0.8
1,206,502	+		MMJJ_RS06535	0.58	+2.7
1,206,509	-		MMJJ_RS06535	0.58	+2.3
1,206,531	-				+1.5
1,206,531	-		MMJJ_RS06535	0.61	-0.4
1,206,576	-		MMJJ_RS06535	0.65	+2.0
1,206,577	+		MMJJ_RS06535	0.65	+3.2
1,206,577	+		MMJJ_RS06535	0.65	+2.6
1,206,623	-		MMJJ_RS06535	0.70	+4.1
1,206,626	-		MMJJ_RS06535	0.70	+1.1
1,206,627	+		MMJJ_RS06535	0.70	+4.5
1,206,627	+		MMJJ_RS06535	0.70	+3.7
1,206,627	+		MMJJ_RS06535	0.70	+2.4
1,206,630	-		MMJJ_RS06535	0.70	+3.7
1,206,630	-		MMJJ_RS06535	0.70	-0.8
1,206,631	+		MMJJ_RS06535	0.70	+4.2
1,206,632	-		MMJJ_RS06535	0.70	-1.5
1,206,633	+		MMJJ_RS06535	0.71	+1.1
1,206,636	-		MMJJ_RS06535	0.71	+4.2
1,206,643	-		MMJJ_RS06535	0.72	+3.2
1,206,643	-		MMJJ_RS06535	0.72	+2.0
1,206,644	+		MMJJ_RS06535	0.72	+2.3
1,206,647	-		MMJJ_RS06535	0.72	+2.0
1,206,647	-		MMJJ_RS06535	0.72	+3.3
1,206,648	+		MMJJ_RS06535	0.72	+0.5
1,206,648	+		MMJJ_RS06535	0.72	-0.1
1,206,662	-		MMJJ_RS06535	0.73	+2.9
1,206,662	-		MMJJ_RS06535	0.73	+1.8
1,206,683	-		MMJJ_RS06535	0.75	+2.4
1,206,684	+		MMJJ_RS06535	0.76	+3.6
1,206,701	+		MMJJ_RS06535	0.77	-1.5
1,206,701	+		MMJJ_RS06535	0.77	+2.4
1,206,701	+		MMJJ_RS06535	0.77	+4.0
1,206,707	-		MMJJ_RS06535	0.78	-0.4
1,206,782	+		MMJJ_RS06535	0.85	+3.9
1,206,792	-		MMJJ_RS06535	0.86	+2.7
1,206,793	+		MMJJ_RS06535	0.86	+3.2
1,206,797	-		MMJJ_RS06535	0.87	+2.8
1,206,798	+		MMJJ_RS06535	0.87	-0.1
1,206,798	+		MMJJ_RS06535	0.87	-0.9
1,206,798	+		MMJJ_RS06535	0.87	+1.4
1,206,803	+		MMJJ_RS06535	0.87	+0.9
1,206,834	-				-1.5
1,206,834	-				-1.3
1,206,835	+				-1.9
1,206,835	+				+1.8
1,206,847	-				+3.4
1,206,848	+				+2.6
1,206,848	+				+0.9
1,206,848	+				+0.5
1,206,848	+				-3.1
1,206,890	-				+1.9
1,206,903	-				+2.6
1,206,916	-				+1.4
1,206,931	-				-0.1
1,206,931	-				-2.2
1,206,939	-				-2.9
1,206,943	+				-0.1
1,206,943	+				+0.2
1,206,943	+				+1.7
1,206,943	+				+1.0
1,206,949	+				+3.1
1,206,959	-				+0.7
1,206,960	+				+1.2
1,206,964	+				+1.0
1,206,996	-		MMJJ_RS06540	0.13	-1.5
1,207,017	-		MMJJ_RS06540	0.18	-1.0
1,207,147	+		MMJJ_RS06540	0.49	-1.9
1,207,169	-		MMJJ_RS06540	0.54	+0.9
1,207,291	-		MMJJ_RS06540	0.83	+1.2
1,207,303	+		MMJJ_RS06540	0.86	-0.5
1,207,313	+		MMJJ_RS06540	0.88	-1.1
1,207,350	+				+0.4
1,207,384	-				+0.8
1,207,404	-				+1.0
1,207,554	+		MMJJ_RS06545	0.24	-1.5
1,207,686	-		MMJJ_RS06545	0.44	-1.5
1,207,805	-		MMJJ_RS06545	0.62	-1.1
1,207,844	+				+1.5