Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS06495

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,197,647	-		MMJJ_RS06490	0.12	-0.5
1,197,656	+		MMJJ_RS06490	0.13	+0.5
1,197,836	-		MMJJ_RS06490	0.31	+0.5
1,197,847	-		MMJJ_RS06490	0.32	-0.1
1,197,962	+				-0.1
1,198,119	-				+0.5
1,198,181	-		MMJJ_RS06490	0.67	-0.1
1,198,189	-		MMJJ_RS06490	0.67	+0.5
1,198,265	-				-0.1
1,198,333	-		MMJJ_RS06490	0.82	+0.5
1,198,482	+				-1.0
1,198,488	-				-2.9
1,198,488	-				-1.7
1,198,488	-				-1.1
1,198,489	+				-0.5
1,198,489	+				-1.9
1,198,528	-				-1.1
1,198,528	-				-0.1
1,198,528	-				-1.5
1,198,528	-				-0.5
1,198,528	-				+3.8
1,198,528	-				+2.0
1,198,529	+				-0.4
1,198,538	+				+1.2
1,198,542	-				-1.1
1,198,559	+		MMJJ_RS06495	0.15	-0.4
1,198,665	-		MMJJ_RS06495	0.52	-0.9
1,198,711	-		MMJJ_RS06495	0.67	-2.4
1,198,726	-		MMJJ_RS06495	0.73	-2.2
1,198,751	+		MMJJ_RS06495	0.81	-2.1
1,198,772	-		MMJJ_RS06495	0.88	-0.1
1,198,787	-				+0.2
1,198,787	-				-3.2
1,198,827	-				+4.1
1,198,863	+				-3.7
1,198,868	+				+1.0
1,198,875	-		MMJJ_RS06500	0.10	-0.1
1,198,876	+		MMJJ_RS06500	0.10	-3.5
1,198,885	+		MMJJ_RS06500	0.12	+1.0
1,198,967	+		MMJJ_RS06500	0.23	+2.9
1,198,969	-		MMJJ_RS06500	0.23	-1.4
1,198,969	-		MMJJ_RS06500	0.23	+2.5
1,198,975	+		MMJJ_RS06500	0.24	-2.5
1,199,007	+		MMJJ_RS06500	0.29	+3.2
1,199,014	+		MMJJ_RS06500	0.30	+1.8
1,199,014	+		MMJJ_RS06500	0.30	-1.9
1,199,030	+		MMJJ_RS06500	0.32	+2.5
1,199,036	-		MMJJ_RS06500	0.33	+4.2
1,199,037	+		MMJJ_RS06500	0.33	-0.9
1,199,072	+		MMJJ_RS06500	0.38	-0.6
1,199,119	-		MMJJ_RS06500	0.45	+2.7
1,199,119	-		MMJJ_RS06500	0.45	-0.5
1,199,119	-		MMJJ_RS06500	0.45	-1.7
1,199,120	+		MMJJ_RS06500	0.45	-2.1
1,199,228	-		MMJJ_RS06500	0.60	-0.0
1,199,239	+		MMJJ_RS06500	0.61	+1.6
1,199,241	-		MMJJ_RS06500	0.62	+2.3
1,199,242	+		MMJJ_RS06500	0.62	+2.0
1,199,408	+		MMJJ_RS06500	0.85	-0.5
1,199,412	-		MMJJ_RS06500	0.86	+0.2