Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS06380

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,180,651	+				+0.4
1,180,858	+				+1.8
1,180,879	-				-0.1
1,180,880	+				-2.2
1,180,884	-				+0.2
1,180,884	-				+0.5
1,180,884	-				+2.0
1,180,884	-				+2.6
1,180,884	-				-0.2
1,180,884	-				+1.2
1,180,884	-				-2.3
1,180,884	-				+1.7
1,180,884	-				+0.3
1,180,884	-				-1.9
1,180,884	-				+0.8
1,180,884	-				+1.6
1,180,884	-				+1.5
1,180,885	+				-1.1
1,180,885	+				-1.8
1,180,885	+				-0.5
1,180,885	+				+2.0
1,180,885	+				-1.4
1,180,885	+				+0.4
1,180,885	+				+2.9
1,180,885	+				+0.4
1,180,885	+				-0.4
1,180,889	-				+1.3
1,180,889	-				+0.8
1,180,896	+				-2.5
1,180,930	-				+2.7
1,180,930	-				+2.0
1,180,930	-				+1.5
1,180,930	-				-2.8
1,180,930	-				-0.4
1,180,930	-				+5.2
1,180,930	-				-2.8
1,180,930	-				-1.6
1,180,930	-				+3.4
1,180,930	-				-1.0
1,180,930	-				-1.3
1,180,930	-				-1.4
1,180,930	-				+1.1
1,180,931	+				-3.3
1,180,931	+				-0.4
1,180,931	+				-0.6
1,180,931	+				-0.6
1,180,931	+				+2.3
1,180,931	+				-0.6
1,180,931	+				+1.4
1,180,931	+				-2.3
1,180,931	+				+1.7
1,180,931	+				-1.7
1,180,932	-				-0.6
1,180,932	-				+0.5
1,180,932	-				-0.6
1,180,933	+				+0.9
1,180,933	+				+3.1
1,180,933	+				+3.7
1,180,934	-				-2.0
1,180,934	-				-0.2
1,180,934	-				-1.6
1,180,935	+				-1.1
1,180,936	-				-1.5
1,180,937	+				+0.5
1,180,937	+				-1.6
1,180,937	+				-2.3
1,180,958	+				+0.9
1,180,961	+				+0.4
1,180,961	+				+0.1
1,180,961	+				-0.7
1,180,963	+				-0.6
1,180,980	-				+0.4
1,180,995	+				-1.8
1,180,995	+				-2.5
1,181,272	-		MMJJ_RS06375	0.52	+0.4
1,181,280	-		MMJJ_RS06375	0.54	-1.6
1,181,331	+		MMJJ_RS06375	0.63	+0.1
1,181,359	+		MMJJ_RS06375	0.68	-1.6
1,181,361	-		MMJJ_RS06375	0.68	-1.4
1,181,390	-		MMJJ_RS06375	0.73	+1.4
1,181,435	+		MMJJ_RS06375	0.81	-2.0
1,181,453	-		MMJJ_RS06375	0.85	-2.4
1,181,453	-		MMJJ_RS06375	0.85	-1.9
1,181,517	+				-0.9
1,181,520	-				-0.1
1,181,536	-				+2.6
1,181,536	-				+2.3
1,181,537	+				-2.0
1,181,537	+				-1.7
1,181,547	-				-1.6
1,181,550	-				+1.7
1,181,564	-				-0.9
1,181,876	+		MMJJ_RS06380	0.23	+0.9
1,181,934	+		MMJJ_RS06380	0.27	-0.9
1,181,995	+		MMJJ_RS06380	0.32	-0.5
1,182,005	+		MMJJ_RS06380	0.33	+0.5
1,182,218	+		MMJJ_RS06380	0.48	-1.7
1,182,293	-		MMJJ_RS06380	0.54	-1.4
1,182,311	+		MMJJ_RS06380	0.55	+0.9
1,182,359	+		MMJJ_RS06380	0.59	-0.1
1,182,359	+		MMJJ_RS06380	0.59	-1.4
1,182,461	+		MMJJ_RS06380	0.66	-0.9
1,182,491	+		MMJJ_RS06380	0.68	-0.1
1,182,908	-				+3.4
1,182,921	+				+0.5
1,182,932	+				-1.3
1,182,946	-				-0.1
1,182,967	-				-1.9
1,182,975	+				-1.9
1,182,975	+				-1.4
1,183,009	+				+1.8
1,183,013	+				+1.0
1,183,051	-				-0.6
1,183,063	-				+1.8
1,183,068	-				+1.5
1,183,083	-		MMJJ_RS06385	0.13	-0.5
1,183,084	+		MMJJ_RS06385	0.13	-2.8
1,183,129	+		MMJJ_RS06385	0.33	+0.5
1,183,135	-		MMJJ_RS06385	0.36	+1.3
1,183,135	-		MMJJ_RS06385	0.36	+2.9
1,183,137	-		MMJJ_RS06385	0.37	-1.2
1,183,137	-		MMJJ_RS06385	0.37	+2.7
1,183,138	+		MMJJ_RS06385	0.37	-3.0
1,183,138	+		MMJJ_RS06385	0.37	+1.3
1,183,138	+		MMJJ_RS06385	0.37	+0.2
1,183,182	-		MMJJ_RS06385	0.57	-0.3
1,183,186	+		MMJJ_RS06385	0.59	-1.4
1,183,186	+		MMJJ_RS06385	0.59	-2.7
1,183,188	-		MMJJ_RS06385	0.60	+0.7
1,183,199	+		MMJJ_RS06385	0.65	+0.6
1,183,264	+				+4.0
1,183,274	-				-0.6
1,183,291	+				+1.5
1,183,504	-		MMJJ_RS06390	0.34	-0.5
1,183,707	-		MMJJ_RS06390	0.65	-0.1
1,183,735	-		MMJJ_RS06390	0.69	-0.9
1,183,777	+		MMJJ_RS06390	0.75	+1.5