Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS06270

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,163,574	+		MMJJ_RS06265	0.19	-2.6
1,163,574	+		MMJJ_RS06265	0.19	-2.3
1,163,574	+		MMJJ_RS06265	0.19	-0.2
1,163,635	-		MMJJ_RS06265	0.24	-0.9
1,163,660	-		MMJJ_RS06265	0.27	-0.1
1,163,660	-		MMJJ_RS06265	0.27	+0.2
1,163,667	-		MMJJ_RS06265	0.27	-0.0
1,163,667	-		MMJJ_RS06265	0.27	+1.4
1,163,667	-		MMJJ_RS06265	0.27	-1.1
1,163,669	-		MMJJ_RS06265	0.27	+1.4
1,163,669	-		MMJJ_RS06265	0.27	-1.7
1,163,669	-		MMJJ_RS06265	0.27	-3.1
1,163,669	-		MMJJ_RS06265	0.27	+0.4
1,163,670	+		MMJJ_RS06265	0.27	+0.9
1,163,683	+		MMJJ_RS06265	0.29	-2.3
1,163,714	-		MMJJ_RS06265	0.31	-1.3
1,163,730	+		MMJJ_RS06265	0.33	-1.1
1,163,742	+		MMJJ_RS06265	0.34	-2.4
1,163,782	+		MMJJ_RS06265	0.37	-2.0
1,163,798	-		MMJJ_RS06265	0.39	+0.4
1,163,799	+		MMJJ_RS06265	0.39	-0.6
1,163,843	-		MMJJ_RS06265	0.43	-1.4
1,163,843	-		MMJJ_RS06265	0.43	-1.7
1,163,843	-		MMJJ_RS06265	0.43	-1.1
1,163,843	-		MMJJ_RS06265	0.43	-1.2
1,163,844	+		MMJJ_RS06265	0.43	+0.4
1,163,844	+		MMJJ_RS06265	0.43	-2.4
1,163,844	+		MMJJ_RS06265	0.43	-1.1
1,163,914	-		MMJJ_RS06265	0.49	+0.1
1,163,914	-		MMJJ_RS06265	0.49	-1.6
1,163,928	+		MMJJ_RS06265	0.51	-2.0
1,163,928	+		MMJJ_RS06265	0.51	+1.4
1,163,961	+		MMJJ_RS06265	0.54	-0.6
1,164,013	+		MMJJ_RS06265	0.58	+0.5
1,164,065	-		MMJJ_RS06265	0.63	-0.6
1,164,065	-		MMJJ_RS06265	0.63	-1.4
1,164,065	-		MMJJ_RS06265	0.63	-0.4
1,164,065	-		MMJJ_RS06265	0.63	+1.6
1,164,066	+		MMJJ_RS06265	0.63	-1.7
1,164,092	+		MMJJ_RS06265	0.65	-1.2
1,164,118	+		MMJJ_RS06265	0.68	-0.5
1,164,118	+		MMJJ_RS06265	0.68	-1.7
1,164,160	+		MMJJ_RS06265	0.71	-1.1
1,164,274	+		MMJJ_RS06265	0.82	-2.6
1,164,375	-				-1.7
1,164,420	-				-0.1
1,164,439	-				-1.9
1,164,480	-				+0.4
1,164,481	+				-0.9
1,164,487	-				+1.4
1,164,488	+				-1.1
1,164,525	-				-1.6
1,164,526	+				-1.2
1,164,526	+				-0.9
1,164,568	-				-1.0
1,164,569	+				+1.4
1,164,569	+				-2.1
1,164,581	-				+0.4
1,164,581	-				-0.9
1,164,582	+				-0.4
1,164,582	+				-0.6
1,164,584	+				+1.9
1,164,584	+				-1.4
1,164,615	+		MMJJ_RS06270	0.13	-1.8
1,164,621	-		MMJJ_RS06270	0.14	-0.6
1,164,621	-		MMJJ_RS06270	0.14	-2.0
1,164,621	-		MMJJ_RS06270	0.14	-1.7
1,164,621	-		MMJJ_RS06270	0.14	-0.9
1,164,622	+		MMJJ_RS06270	0.14	-0.1
1,164,622	+		MMJJ_RS06270	0.14	-1.9
1,164,622	+		MMJJ_RS06270	0.14	-1.4
1,164,627	+		MMJJ_RS06270	0.15	-0.9
1,164,731	+		MMJJ_RS06270	0.33	-2.5
1,164,784	+		MMJJ_RS06270	0.43	+1.4
1,164,788	+		MMJJ_RS06270	0.43	+0.0
1,164,834	-		MMJJ_RS06270	0.51	+0.4
1,164,850	-		MMJJ_RS06270	0.54	-2.4
1,164,919	-		MMJJ_RS06270	0.66	-0.1
1,164,919	-		MMJJ_RS06270	0.66	+0.4
1,164,933	-		MMJJ_RS06270	0.69	-0.4
1,164,945	+		MMJJ_RS06270	0.71	-0.9
1,164,958	-		MMJJ_RS06270	0.73	+1.0
1,164,959	+		MMJJ_RS06270	0.73	-1.9
1,164,974	+		MMJJ_RS06270	0.76	-0.9
1,165,005	-		MMJJ_RS06270	0.81	-2.3
1,165,009	+		MMJJ_RS06270	0.82	-2.1
1,165,094	-				-2.1
1,165,094	-				+2.9
1,165,095	+				+2.5
1,165,095	+				+1.4
1,165,155	+		MMJJ_RS06275	0.10	+0.4
1,165,171	-		MMJJ_RS06275	0.16	+0.3
1,165,175	-		MMJJ_RS06275	0.17	-0.8
1,165,210	-		MMJJ_RS06275	0.29	+0.3
1,165,363	-		MMJJ_RS06275	0.80	-1.8
1,165,363	-		MMJJ_RS06275	0.80	-1.2
1,165,364	+		MMJJ_RS06275	0.81	+0.2
1,165,367	-		MMJJ_RS06275	0.82	+4.2
1,165,367	-		MMJJ_RS06275	0.82	+1.2
1,165,368	+		MMJJ_RS06275	0.82	+1.1
1,165,374	+		MMJJ_RS06275	0.84	+1.1
1,165,394	-				+2.1
1,165,440	-				-0.8
1,165,440	-				+1.3
1,165,440	-				-2.4
1,165,440	-				+2.7
1,165,441	+				-1.2
1,165,441	+				-0.2
1,165,442	-				-2.5
1,165,442	-				+3.5
1,165,443	+				-2.6
1,165,443	+				+2.9
1,165,448	-				+2.7
1,165,448	-				+1.4
1,165,449	+				-1.9
1,165,449	+				+2.3
1,165,449	+				-3.1
1,165,450	-				-1.1
1,165,450	-				-2.0
1,165,450	-				+1.3
1,165,450	-				+1.7
1,165,450	-				+1.4
1,165,451	+				-2.0
1,165,451	+				-2.8
1,165,451	+				-1.1
1,165,451	+				+1.7
1,165,452	-				-1.6
1,165,452	-				+1.8
1,165,452	-				+0.1
1,165,453	+				+0.2
1,165,453	+				-0.1
1,165,453	+				+1.4
1,165,453	+				-0.9
1,165,454	-				+3.5
1,165,454	-				+1.9
1,165,454	-				-0.7
1,165,454	-				-0.9
1,165,455	+				+2.7
1,165,455	+				-1.7
1,165,455	+				-1.0
1,165,455	+				-2.3
1,165,458	-				-2.8
1,165,458	-				+0.9
1,165,458	-				-0.1
1,165,458	-				-1.5
1,165,458	-				-1.0
1,165,482	+				+1.4
1,165,484	+				+0.2
1,165,484	+				+0.9
1,165,484	+				-0.0
1,165,484	+				+2.1
1,165,484	+				-2.0
1,165,488	+				-2.8
1,165,505	-				-0.0
1,165,515	+				+1.1
1,165,517	-				+0.4
1,165,517	-				-0.1
1,165,517	-				+3.3
1,165,518	+				-0.8
1,165,518	+				+1.5
1,165,554	-				-1.9
1,165,554	-				-0.8
1,165,579	-				-0.1
1,165,579	-				-0.1
1,165,580	+				-0.5
1,165,580	+				-0.1
1,165,593	-				+2.5
1,165,593	-				+0.7
1,165,594	+				-1.6
1,165,594	+				+1.7
1,165,601	+				-0.4
1,165,644	-		MMJJ_RS06280	0.14	-1.7
1,165,644	-		MMJJ_RS06280	0.14	-1.3
1,165,645	+		MMJJ_RS06280	0.15	+3.8
1,165,645	+		MMJJ_RS06280	0.15	+1.4
1,165,645	+		MMJJ_RS06280	0.15	+0.3
1,165,687	-		MMJJ_RS06280	0.19	-2.7
1,165,687	-		MMJJ_RS06280	0.19	+1.6
1,165,768	-		MMJJ_RS06280	0.28	+2.9
1,165,834	-		MMJJ_RS06280	0.35	-0.3
1,165,839	-		MMJJ_RS06280	0.35	+2.3
1,165,843	+		MMJJ_RS06280	0.36	+0.8
1,165,843	+		MMJJ_RS06280	0.36	-1.2
1,165,845	+		MMJJ_RS06280	0.36	-1.0
1,165,845	+		MMJJ_RS06280	0.36	+1.7
1,165,868	+		MMJJ_RS06280	0.38	+0.4
1,165,872	-		MMJJ_RS06280	0.39	+3.5
1,165,874	-		MMJJ_RS06280	0.39	+1.7
1,165,875	+		MMJJ_RS06280	0.39	+0.4
1,165,926	+		MMJJ_RS06280	0.45	+1.0
1,165,926	+		MMJJ_RS06280	0.45	+0.9
1,165,927	-		MMJJ_RS06280	0.45	+1.8
1,165,951	-		MMJJ_RS06280	0.47	-1.7
1,165,952	+		MMJJ_RS06280	0.47	+3.4
1,165,994	-		MMJJ_RS06280	0.52	+0.8
1,165,995	+		MMJJ_RS06280	0.52	+0.7
1,165,995	+		MMJJ_RS06280	0.52	+0.8
1,166,004	+		MMJJ_RS06280	0.53	+1.7
1,166,067	+		MMJJ_RS06280	0.60	+0.7
1,166,089	+		MMJJ_RS06280	0.62	-1.2