Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS06260

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,161,630	+		MMJJ_RS06255	0.61	+1.5
1,161,656	+		MMJJ_RS06255	0.62	-1.5
1,161,656	+		MMJJ_RS06255	0.62	-0.5
1,161,663	+		MMJJ_RS06255	0.63	-1.5
1,161,752	-		MMJJ_RS06255	0.68	-0.1
1,161,781	+		MMJJ_RS06255	0.70	-0.1
1,161,805	-		MMJJ_RS06255	0.72	+0.5
1,161,813	+		MMJJ_RS06255	0.72	-0.5
1,161,818	-		MMJJ_RS06255	0.72	-0.9
1,161,819	+		MMJJ_RS06255	0.72	-2.0
1,161,845	-		MMJJ_RS06255	0.74	-1.1
1,161,850	+		MMJJ_RS06255	0.74	-0.5
1,161,850	+		MMJJ_RS06255	0.74	+1.5
1,161,929	+		MMJJ_RS06255	0.79	-0.5
1,162,193	+				-1.9
1,162,209	-				-1.4
1,162,242	-				-1.5
1,162,283	+				-2.0
1,162,294	+				+2.6
1,162,304	-		MMJJ_RS09355	0.15	-1.7
1,162,308	-		MMJJ_RS09355	0.17	-1.7
1,162,308	-		MMJJ_RS09355	0.17	-2.4
1,162,309	+		MMJJ_RS09355	0.18	+3.0
1,162,311	-		MMJJ_RS09355	0.19	+1.8
1,162,324	-		MMJJ_RS09355	0.28	+0.3
1,162,339	+		MMJJ_RS09355	0.37	-1.2
1,162,367	-		MMJJ_RS09355	0.55	-1.7
1,162,367	-		MMJJ_RS09355	0.55	+2.8
1,162,432	+				+0.5
1,162,476	-				-1.4
1,162,478	-				+2.4
1,162,479	+				+3.4
1,162,480	-				-3.6
1,162,480	-				-1.2
1,162,481	+				+3.9
1,162,481	+				-0.4
1,162,481	+				-1.7
1,162,481	+				+0.3
1,162,482	-				-1.1
1,162,482	-				-0.4
1,162,483	+				-1.9
1,162,483	+				+0.4
1,162,499	-				+0.7
1,162,572	+				+1.2
1,162,591	-				-1.5
1,162,592	+				+1.2
1,162,617	+				-0.5
1,162,765	-		MMJJ_RS06260	0.19	-1.4
1,162,800	-		MMJJ_RS06260	0.24	-2.3
1,162,805	-		MMJJ_RS06260	0.25	-1.4
1,162,876	-		MMJJ_RS06260	0.35	-3.7
1,162,877	+		MMJJ_RS06260	0.35	-1.3
1,162,877	+		MMJJ_RS06260	0.35	-0.1
1,162,960	-		MMJJ_RS06260	0.46	-3.5
1,163,080	+		MMJJ_RS06260	0.62	+1.4
1,163,182	-		MMJJ_RS06260	0.76	-2.4
1,163,201	-		MMJJ_RS06260	0.79	+0.6
1,163,213	-		MMJJ_RS06260	0.80	-1.9
1,163,214	+		MMJJ_RS06260	0.81	-0.7
1,163,225	+		MMJJ_RS06260	0.82	+0.3
1,163,239	-		MMJJ_RS06260	0.84	-1.5
1,163,240	+		MMJJ_RS06260	0.84	-0.1
1,163,247	-		MMJJ_RS06260	0.85	-2.6
1,163,247	-		MMJJ_RS06260	0.85	+1.6
1,163,284	+				+0.8
1,163,335	-				-0.8
1,163,351	-				-1.6
1,163,352	+				-1.1
1,163,352	+				+1.6
1,163,354	-				-1.7
1,163,355	+				-0.2
1,163,365	+				+2.0
1,163,506	+		MMJJ_RS06265	0.13	-1.7
1,163,512	-		MMJJ_RS06265	0.13	-1.6
1,163,512	-		MMJJ_RS06265	0.13	-1.1
1,163,512	-		MMJJ_RS06265	0.13	-2.3
1,163,512	-		MMJJ_RS06265	0.13	-1.4
1,163,512	-		MMJJ_RS06265	0.13	+1.4
1,163,513	+		MMJJ_RS06265	0.13	-2.1
1,163,531	+		MMJJ_RS06265	0.15	-1.7
1,163,574	+		MMJJ_RS06265	0.19	-2.6
1,163,574	+		MMJJ_RS06265	0.19	-2.3
1,163,574	+		MMJJ_RS06265	0.19	-0.2
1,163,635	-		MMJJ_RS06265	0.24	-0.9
1,163,660	-		MMJJ_RS06265	0.27	-0.1
1,163,660	-		MMJJ_RS06265	0.27	+0.2
1,163,667	-		MMJJ_RS06265	0.27	-0.0
1,163,667	-		MMJJ_RS06265	0.27	+1.4
1,163,667	-		MMJJ_RS06265	0.27	-1.1
1,163,669	-		MMJJ_RS06265	0.27	+1.4
1,163,669	-		MMJJ_RS06265	0.27	-1.7
1,163,669	-		MMJJ_RS06265	0.27	-3.1
1,163,669	-		MMJJ_RS06265	0.27	+0.4
1,163,670	+		MMJJ_RS06265	0.27	+0.9
1,163,683	+		MMJJ_RS06265	0.29	-2.3
1,163,714	-		MMJJ_RS06265	0.31	-1.3
1,163,730	+		MMJJ_RS06265	0.33	-1.1
1,163,742	+		MMJJ_RS06265	0.34	-2.4
1,163,782	+		MMJJ_RS06265	0.37	-2.0
1,163,798	-		MMJJ_RS06265	0.39	+0.4
1,163,799	+		MMJJ_RS06265	0.39	-0.6
1,163,843	-		MMJJ_RS06265	0.43	-1.4
1,163,843	-		MMJJ_RS06265	0.43	-1.7
1,163,843	-		MMJJ_RS06265	0.43	-1.1
1,163,843	-		MMJJ_RS06265	0.43	-1.2
1,163,844	+		MMJJ_RS06265	0.43	+0.4
1,163,844	+		MMJJ_RS06265	0.43	-2.4
1,163,844	+		MMJJ_RS06265	0.43	-1.1
1,163,914	-		MMJJ_RS06265	0.49	+0.1
1,163,914	-		MMJJ_RS06265	0.49	-1.6
1,163,928	+		MMJJ_RS06265	0.51	-2.0
1,163,928	+		MMJJ_RS06265	0.51	+1.4
1,163,961	+		MMJJ_RS06265	0.54	-0.6
1,164,013	+		MMJJ_RS06265	0.58	+0.5
1,164,065	-		MMJJ_RS06265	0.63	-0.6
1,164,065	-		MMJJ_RS06265	0.63	-1.4
1,164,065	-		MMJJ_RS06265	0.63	-0.4
1,164,065	-		MMJJ_RS06265	0.63	+1.6
1,164,066	+		MMJJ_RS06265	0.63	-1.7
1,164,092	+		MMJJ_RS06265	0.65	-1.2
1,164,118	+		MMJJ_RS06265	0.68	-0.5
1,164,118	+		MMJJ_RS06265	0.68	-1.7
1,164,160	+		MMJJ_RS06265	0.71	-1.1
1,164,274	+		MMJJ_RS06265	0.82	-2.6