Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS06225

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,153,670	+				+0.5
1,153,670	+				-1.5
1,153,670	+				+1.5
1,153,670	+				-0.1
1,153,670	+				-0.1
1,153,728	-				+1.9
1,153,745	+				-2.1
1,153,745	+				+1.6
1,153,752	-				-2.4
1,153,752	-				+1.9
1,153,752	-				+1.2
1,153,752	-				+1.5
1,153,752	-				+1.6
1,153,753	+				+0.5
1,153,757	+				+0.5
1,153,757	+				-0.9
1,153,760	-				-0.2
1,153,760	-				+0.6
1,153,761	+				+0.6
1,153,776	-				-0.1
1,153,805	+				-1.5
1,153,805	+				-0.1
1,153,886	-		MMJJ_RS06220	0.17	-1.5
1,153,909	-		MMJJ_RS06220	0.20	+0.2
1,153,910	+		MMJJ_RS06220	0.20	-1.9
1,153,922	-		MMJJ_RS06220	0.21	-0.5
1,153,923	+		MMJJ_RS06220	0.21	-1.7
1,153,927	+		MMJJ_RS06220	0.22	+1.0
1,153,927	+		MMJJ_RS06220	0.22	-1.0
1,153,983	-		MMJJ_RS06220	0.28	-1.4
1,153,999	+		MMJJ_RS06220	0.30	-0.5
1,154,054	+		MMJJ_RS06220	0.37	+0.5
1,154,245	+		MMJJ_RS06220	0.60	+1.5
1,154,291	-		MMJJ_RS06220	0.65	+0.5
1,154,292	+		MMJJ_RS06220	0.65	-1.3
1,154,401	+		MMJJ_RS06220	0.78	+0.8
1,154,402	-		MMJJ_RS06220	0.78	-0.7
1,154,515	+				-1.4
1,154,515	+				-0.5
1,154,608	-				+0.5
1,154,712	+		MMJJ_RS06225	0.35	+1.5
1,154,712	+		MMJJ_RS06225	0.35	-0.1
1,154,756	-		MMJJ_RS06225	0.47	-1.1
1,154,757	+		MMJJ_RS06225	0.47	-1.5
1,154,772	+		MMJJ_RS06225	0.51	-1.5
1,154,774	-				-0.1
1,155,006	-				-1.7
1,155,032	-				+1.5
1,155,032	-				+2.9
1,155,032	-				+6.0
1,155,032	-				+5.2
1,155,032	-				+4.9
1,155,033	+				+0.1
1,155,033	+				-0.2
1,155,044	-				+3.4
1,155,044	-				+4.3
1,155,047	-				-0.1
1,155,050	+				+4.5
1,155,055	-				+3.7
1,155,056	+				+0.7
1,155,056	+				+2.5
1,155,060	-				+3.8
1,155,060	-				-1.9
1,155,061	+				+1.0
1,155,061	+				+2.5
1,155,066	-				-2.6
1,155,066	-				+1.5
1,155,066	-				+1.9
1,155,066	-				+0.1
1,155,067	+				+0.2
1,155,067	+				+2.6
1,155,067	+				+2.2
1,155,067	+				+1.5
1,155,067	+				+0.8
1,155,067	+				+0.5
1,155,067	+				+2.3
1,155,068	-				+3.8
1,155,068	-				-0.7
1,155,068	-				+5.1
1,155,068	-				+3.7
1,155,068	-				-3.4
1,155,068	-				+2.4
1,155,068	-				+2.1
1,155,068	-				-0.3
1,155,069	+				+1.5
1,155,069	+				-0.0
1,155,069	+				+5.5
1,155,069	+				+2.2
1,155,069	+				+0.7
1,155,070	-				+1.3
1,155,070	-				+1.3
1,155,070	-				+3.9
1,155,070	-				+0.9
1,155,070	-				+1.0
1,155,070	-				+0.8
1,155,070	-				-2.2
1,155,070	-				-0.3
1,155,070	-				+2.5
1,155,070	-				-2.2
1,155,071	+				+4.8
1,155,071	+				-3.4
1,155,071	+				-2.2
1,155,071	+				+0.4
1,155,071	+				+2.7
1,155,071	+				+1.8
1,155,071	+				+1.2
1,155,071	+				+0.3
1,155,075	-				+3.3
1,155,075	-				-1.8
1,155,075	-				+0.2
1,155,075	-				+1.8
1,155,076	+				-0.5
1,155,076	+				+3.4
1,155,329	-		MMJJ_RS06230	0.52	+0.5
1,155,409	-		MMJJ_RS06230	0.68	-0.9
1,155,613	-				-1.1
1,155,614	+				+0.0
1,155,618	+				-0.8
1,155,669	-				-2.2
1,155,808	+				-3.1
1,155,828	-				-0.7
1,155,828	-				-1.6
1,155,851	-				-0.9
1,155,864	-				+0.5
1,155,872	-				+0.6
1,155,873	+				+2.5
1,155,883	+				+0.5
1,155,924	-				+2.1
1,155,924	-				+1.2