Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS06175

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,144,396	-		MMJJ_RS06165	0.79	-2.5
1,144,396	-		MMJJ_RS06165	0.79	+1.0
1,144,397	+		MMJJ_RS06165	0.79	-1.1
1,144,402	-		MMJJ_RS06165	0.80	-0.6
1,144,403	+		MMJJ_RS06165	0.80	-0.6
1,144,430	+		MMJJ_RS06165	0.81	-2.3
1,144,489	-		MMJJ_RS06165	0.85	-1.1
1,144,531	-		MMJJ_RS06165	0.88	-1.7
1,144,545	+		MMJJ_RS06165	0.88	+2.2
1,144,564	-		MMJJ_RS06165	0.90	+2.5
1,144,564	-		MMJJ_RS06165	0.90	+0.7
1,144,618	-				+0.5
1,144,619	+				+1.5
1,144,623	+				-1.4
1,144,713	+				+1.4
1,144,713	+				+0.8
1,144,728	-				+2.1
1,144,741	+				+2.0
1,144,745	+				+0.3
1,144,799	+				-0.1
1,144,838	-				-1.4
1,144,891	-		MMJJ_RS06170	0.19	-0.1
1,144,903	-		MMJJ_RS06170	0.21	+0.5
1,144,903	-		MMJJ_RS06170	0.21	-2.0
1,144,904	+		MMJJ_RS06170	0.21	+0.1
1,144,904	+		MMJJ_RS06170	0.21	-1.1
1,144,904	+		MMJJ_RS06170	0.21	+1.5
1,144,904	+		MMJJ_RS06170	0.21	+1.7
1,144,913	-				+0.5
1,144,913	-		MMJJ_RS06170	0.23	+3.0
1,144,914	+		MMJJ_RS06170	0.23	-2.0
1,144,959	+		MMJJ_RS06170	0.31	-0.9
1,144,982	-		MMJJ_RS06170	0.36	-0.9
1,145,002	-		MMJJ_RS06170	0.39	-2.4
1,145,002	-		MMJJ_RS06170	0.39	-0.9
1,145,003	+		MMJJ_RS06170	0.39	-1.1
1,145,003	+		MMJJ_RS06170	0.39	-1.5
1,145,016	+		MMJJ_RS06170	0.42	-1.9
1,145,046	+		MMJJ_RS06170	0.47	-2.2
1,145,127	-		MMJJ_RS06170	0.62	+1.0
1,145,145	-		MMJJ_RS06170	0.66	+0.5
1,145,147	-				+0.5
1,145,147	-		MMJJ_RS06170	0.66	+0.9
1,145,147	-		MMJJ_RS06170	0.66	+0.5
1,145,147	-		MMJJ_RS06170	0.66	-0.9
1,145,148	+		MMJJ_RS06170	0.66	+0.0
1,145,148	+		MMJJ_RS06170	0.66	-1.4
1,145,148	+		MMJJ_RS06170	0.66	-1.9
1,145,148	+		MMJJ_RS06170	0.66	-0.8
1,145,148	+		MMJJ_RS06170	0.66	-1.6
1,145,148	+		MMJJ_RS06170	0.66	+0.2
1,145,148	+		MMJJ_RS06170	0.66	-0.9
1,145,148	+		MMJJ_RS06170	0.66	+1.2
1,145,149	-		MMJJ_RS06170	0.66	+0.1
1,145,149	-		MMJJ_RS06170	0.66	-1.4
1,145,149	-		MMJJ_RS06170	0.66	+2.2
1,145,149	-		MMJJ_RS06170	0.66	-0.9
1,145,149	-		MMJJ_RS06170	0.66	-0.9
1,145,149	-		MMJJ_RS06170	0.66	-0.3
1,145,149	-		MMJJ_RS06170	0.66	-0.5
1,145,149	-		MMJJ_RS06170	0.66	+0.9
1,145,150	+		MMJJ_RS06170	0.66	-1.9
1,145,150	+		MMJJ_RS06170	0.66	-1.5
1,145,150	+		MMJJ_RS06170	0.66	+1.0
1,145,150	+		MMJJ_RS06170	0.66	-1.5
1,145,150	+		MMJJ_RS06170	0.66	+0.5
1,145,150	+		MMJJ_RS06170	0.66	+0.5
1,145,150	+		MMJJ_RS06170	0.66	-2.4
1,145,150	+		MMJJ_RS06170	0.66	-1.1
1,145,150	+		MMJJ_RS06170	0.66	-0.1
1,145,150	+		MMJJ_RS06170	0.66	+0.2
1,145,150	+		MMJJ_RS06170	0.66	+1.3
1,145,150	+		MMJJ_RS06170	0.66	-0.9
1,145,155	+		MMJJ_RS06170	0.67	-0.4
1,145,155	+				+0.5
1,145,263	-		MMJJ_RS06170	0.87	-0.1
1,145,264	+		MMJJ_RS06170	0.87	+0.4
1,145,301	-				-0.1
1,145,309	+				+0.0
1,145,309	+				-0.9
1,145,330	+				-1.4
1,145,330	+				+0.1
1,145,507	-		MMJJ_RS06175	0.18	+1.5
1,145,678	+				+1.5
1,145,824	-		MMJJ_RS06175	0.53	-1.7
1,145,962	+		MMJJ_RS06175	0.68	+0.5
1,145,962	+		MMJJ_RS06175	0.68	-0.5
1,146,045	+		MMJJ_RS06175	0.77	-1.5
1,146,185	+				+2.1
1,146,562	-		MMJJ_RS06180	0.27	+0.5
1,146,563	+				+0.5
1,146,563	+		MMJJ_RS06180	0.27	+0.5
1,146,564	-		MMJJ_RS06180	0.27	-1.0
1,146,564	-		MMJJ_RS06180	0.27	+0.5
1,146,564	-		MMJJ_RS06180	0.27	+0.5
1,146,565	+				+0.5
1,146,658	+		MMJJ_RS06180	0.35	-0.5
1,146,697	+				+0.5
1,146,842	-		MMJJ_RS06180	0.53	-0.8
1,147,174	+		MMJJ_RS06180	0.83	-0.5