Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS05820

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,083,207	+		MMJJ_RS05810	0.11	+0.1
1,083,211	-		MMJJ_RS05810	0.12	-0.9
1,083,212	+		MMJJ_RS05810	0.12	-0.6
1,083,212	+				+0.4
1,083,212	+		MMJJ_RS05810	0.12	-1.4
1,083,332	-		MMJJ_RS05810	0.28	+0.8
1,083,344	+		MMJJ_RS05810	0.29	-0.9
1,083,509	+		MMJJ_RS05810	0.51	-1.4
1,083,520	-		MMJJ_RS05810	0.52	-0.5
1,083,523	-		MMJJ_RS05810	0.53	-0.6
1,083,523	-				+0.4
1,083,597	+		MMJJ_RS05810	0.62	+1.1
1,083,641	-		MMJJ_RS05810	0.68	-0.2
1,083,642	+		MMJJ_RS05810	0.68	+1.4
1,083,642	+		MMJJ_RS05810	0.68	-0.6
1,083,649	-		MMJJ_RS05810	0.69	-1.4
1,083,691	-		MMJJ_RS05810	0.75	-0.4
1,083,691	-		MMJJ_RS05810	0.75	-1.2
1,083,691	-		MMJJ_RS05810	0.75	+4.9
1,083,692	+		MMJJ_RS05810	0.75	-0.2
1,083,693	-		MMJJ_RS05810	0.75	+0.4
1,083,737	+		MMJJ_RS05810	0.81	+1.3
1,083,745	-		MMJJ_RS05810	0.82	-0.2
1,083,788	-		MMJJ_RS05810	0.87	-0.3
1,083,789	+		MMJJ_RS05810	0.87	-0.9
1,083,789	+				+1.4
1,083,790	-		MMJJ_RS05810	0.88	-0.4
1,083,790	-				+1.4
1,083,822	-				+0.4
1,083,823	+				-0.2
1,083,891	+				-0.9
1,083,899	-				-4.3
1,083,912	+		MMJJ_RS05815	0.16	-0.7
1,083,953	+		MMJJ_RS05815	0.36	-0.2
1,083,953	+		MMJJ_RS05815	0.36	-0.8
1,083,956	-		MMJJ_RS05815	0.38	-0.4
1,083,956	-		MMJJ_RS05815	0.38	+1.7
1,083,980	-		MMJJ_RS05815	0.50	+1.8
1,084,021	-		MMJJ_RS05815	0.71	+2.0
1,084,021	-		MMJJ_RS05815	0.71	+1.9
1,084,022	+		MMJJ_RS05815	0.71	+2.1
1,084,061	-				+0.4
1,084,062	+				+1.4
1,084,105	-		MMJJ_RS05820	0.10	-2.9
1,084,115	-		MMJJ_RS05820	0.13	-0.6
1,084,204	+		MMJJ_RS05820	0.38	+3.9
1,084,204	+		MMJJ_RS05820	0.38	+5.4
1,084,205	-		MMJJ_RS05820	0.38	+3.2
1,084,299	-		MMJJ_RS05820	0.64	-1.4
1,084,325	-		MMJJ_RS05820	0.71	+2.9
1,084,325	-		MMJJ_RS05820	0.71	+3.5
1,084,325	-		MMJJ_RS05820	0.71	+0.4
1,084,326	+		MMJJ_RS05820	0.72	+3.0
1,084,335	+		MMJJ_RS05820	0.74	+2.5
1,084,335	+		MMJJ_RS05820	0.74	-0.9
1,084,346	-		MMJJ_RS05820	0.77	-3.2
1,084,389	-		MMJJ_RS05820	0.89	-0.1
1,084,389	-		MMJJ_RS05820	0.89	+3.6
1,084,389	-		MMJJ_RS05820	0.89	-1.8
1,084,390	+		MMJJ_RS05820	0.89	+3.0
1,084,446	-				-1.1
1,084,446	-				+1.5
1,084,446	-				-3.5
1,084,447	+				-2.1
1,084,447	+				+1.1
1,084,447	+				-2.2
1,084,447	+				-1.9
1,084,447	+				-2.4
1,084,447	+				+3.3
1,084,447	+				-2.5
1,084,447	+				+0.7
1,084,447	+				+1.1
1,084,447	+				-1.8
1,084,447	+				+3.7
1,084,447	+				+1.8
1,084,447	+				+3.5
1,084,448	-				-3.2
1,084,448	-				-1.9
1,084,449	+				+1.0
1,084,450	-				-1.7
1,084,450	-				+5.2
1,084,450	-				-1.8
1,084,450	-				+1.8
1,084,451	+				+2.9
1,084,451	+				-2.2
1,084,451	+				+0.1
1,084,451	+				-0.8
1,084,455	-				-2.1
1,084,456	+				-1.1
1,084,456	+				-1.2
1,084,469	+				+0.3
1,084,470	-				+0.4
1,084,472	-				-0.8
1,084,473	+				+1.4
1,084,473	+				+1.0
1,084,473	+				+0.9
1,084,474	-				+1.4
1,084,484	+				+0.3
1,084,484	+				-1.0
1,084,485	-				-0.4
1,085,216	+		MMJJ_RS05825	0.77	-0.2
1,085,225	-		MMJJ_RS05825	0.78	-0.6
1,085,235	+		MMJJ_RS05825	0.79	+0.4
1,085,391	+				+2.6
1,085,423	-				-2.7