Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS05770

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,074,404	+		MMJJ_RS05755	0.72	-0.2
1,074,413	+		MMJJ_RS05755	0.74	+2.3
1,074,442	-		MMJJ_RS05755	0.81	+2.1
1,074,442	-		MMJJ_RS05755	0.81	-0.2
1,074,443	+		MMJJ_RS05755	0.81	-0.0
1,074,475	-		MMJJ_RS05755	0.88	-1.1
1,074,479	-		MMJJ_RS05755	0.89	+2.7
1,074,500	-				+3.1
1,074,503	-				+0.4
1,074,503	-				+1.4
1,074,532	+				+3.4
1,074,532	+				+3.1
1,074,532	+				+3.8
1,074,532	+				+1.6
1,074,532	+				-0.3
1,074,556	+				+2.6
1,074,583	-				+2.2
1,074,584	+				-1.8
1,074,584	+				-0.6
1,074,584	+				+2.7
1,074,584	+				+2.9
1,074,586	-				-1.4
1,074,586	-				+1.2
1,074,587	+				-0.6
1,074,587	+				+2.4
1,074,590	+				+3.1
1,074,612	-		MMJJ_RS05760	0.10	-0.9
1,074,613	+		MMJJ_RS05760	0.11	+1.4
1,074,676	-		MMJJ_RS05760	0.26	+0.7
1,074,676	-		MMJJ_RS05760	0.26	-0.6
1,074,677	+		MMJJ_RS05760	0.26	+1.9
1,074,723	-		MMJJ_RS05760	0.38	+0.4
1,074,724	+		MMJJ_RS05760	0.38	-2.8
1,074,724	+		MMJJ_RS05760	0.38	+3.4
1,074,737	-		MMJJ_RS05760	0.41	-2.3
1,074,742	+		MMJJ_RS05760	0.42	-0.8
1,074,753	-		MMJJ_RS05760	0.45	+2.5
1,074,769	+		MMJJ_RS05760	0.49	-2.7
1,074,769	+		MMJJ_RS05760	0.49	+3.8
1,074,785	-		MMJJ_RS05760	0.53	-0.6
1,074,785	-		MMJJ_RS05760	0.53	+1.3
1,074,810	-		MMJJ_RS05760	0.59	-1.8
1,074,811	+		MMJJ_RS05760	0.59	-3.6
1,074,819	-		MMJJ_RS05760	0.61	+0.6
1,074,831	-		MMJJ_RS05760	0.64	-1.4
1,074,831	-		MMJJ_RS05760	0.64	+0.1
1,074,847	-		MMJJ_RS05760	0.68	+2.9
1,074,847	-		MMJJ_RS05760	0.68	-0.2
1,074,847	-		MMJJ_RS05760	0.68	-0.0
1,074,863	-		MMJJ_RS05760	0.72	+0.5
1,074,864	+		MMJJ_RS05760	0.72	-1.7
1,074,864	+		MMJJ_RS05760	0.72	-2.6
1,074,864	+		MMJJ_RS05760	0.72	+2.1
1,074,865	-		MMJJ_RS05760	0.72	+3.9
1,074,865	-		MMJJ_RS05760	0.72	+4.2
1,074,865	-		MMJJ_RS05760	0.72	-2.3
1,074,865	-		MMJJ_RS05760	0.72	-3.0
1,074,865	-		MMJJ_RS05760	0.72	+3.6
1,074,866	+		MMJJ_RS05760	0.73	-2.5
1,074,866	+		MMJJ_RS05760	0.73	-1.3
1,074,866	+		MMJJ_RS05760	0.73	+1.2
1,074,866	+		MMJJ_RS05760	0.73	+1.4
1,074,876	-		MMJJ_RS05760	0.75	-1.4
1,074,876	-		MMJJ_RS05760	0.75	+4.0
1,074,877	+		MMJJ_RS05760	0.75	+1.7
1,074,891	-		MMJJ_RS05760	0.79	-0.0
1,074,891	-		MMJJ_RS05760	0.79	+3.0
1,074,892	+		MMJJ_RS05760	0.79	+2.8
1,074,898	+		MMJJ_RS05760	0.80	-0.9
1,074,898	+		MMJJ_RS05760	0.80	-2.3
1,074,898	+		MMJJ_RS05760	0.80	+3.8
1,074,898	+		MMJJ_RS05760	0.80	-0.8
1,074,902	-		MMJJ_RS05760	0.81	+4.5
1,074,902	-		MMJJ_RS05760	0.81	+1.4
1,074,902	-		MMJJ_RS05760	0.81	+3.4
1,074,902	-		MMJJ_RS05760	0.81	+2.8
1,074,903	+		MMJJ_RS05760	0.82	+3.3
1,074,907	-		MMJJ_RS05760	0.83	-1.2
1,074,907	-		MMJJ_RS05760	0.83	+1.7
1,074,907	-		MMJJ_RS05760	0.83	-0.1
1,074,907	-		MMJJ_RS05760	0.83	+0.5
1,074,907	-		MMJJ_RS05760	0.83	+2.7
1,074,907	-		MMJJ_RS05760	0.83	+1.3
1,074,907	-		MMJJ_RS05760	0.83	-0.9
1,074,907	-		MMJJ_RS05760	0.83	-1.7
1,074,907	-		MMJJ_RS05760	0.83	-1.5
1,074,908	+		MMJJ_RS05760	0.83	-1.5
1,074,908	+		MMJJ_RS05760	0.83	-1.8
1,074,908	+		MMJJ_RS05760	0.83	+4.3
1,074,908	+		MMJJ_RS05760	0.83	+0.1
1,074,908	+		MMJJ_RS05760	0.83	-0.8
1,074,908	+		MMJJ_RS05760	0.83	-0.3
1,074,908	+		MMJJ_RS05760	0.83	+1.2
1,074,913	-		MMJJ_RS05760	0.84	+1.7
1,074,913	-		MMJJ_RS05760	0.84	-0.3
1,074,913	-		MMJJ_RS05760	0.84	+2.1
1,074,914	+		MMJJ_RS05760	0.84	-2.5
1,074,914	+		MMJJ_RS05760	0.84	+2.2
1,074,914	+		MMJJ_RS05760	0.84	-2.7
1,074,914	+		MMJJ_RS05760	0.84	+1.7
1,074,914	+		MMJJ_RS05760	0.84	+2.2
1,074,924	-		MMJJ_RS05760	0.87	+0.3
1,074,925	+		MMJJ_RS05760	0.87	+0.0
1,074,925	+		MMJJ_RS05760	0.87	-0.3
1,074,968	-				-0.6
1,074,968	-				+1.5
1,074,969	+				+2.2
1,075,075	-		MMJJ_RS05765	0.26	-2.4
1,075,323	-		MMJJ_RS05765	0.87	+0.7
1,075,390	-				-2.0
1,075,391	+				-0.2
1,075,398	-				+0.1
1,075,444	-				-0.9
1,075,660	-		MMJJ_RS05770	0.27	-1.4
1,075,666	-		MMJJ_RS05770	0.27	-2.5
1,075,690	+		MMJJ_RS05770	0.30	-1.6
1,075,803	-		MMJJ_RS05770	0.41	-0.0
1,075,982	+				-0.9
1,076,028	+		MMJJ_RS05770	0.65	-0.2
1,076,889	+				-2.3
1,076,921	+				-0.4
1,076,921	+				-0.9
1,076,924	+				-1.5
1,076,942	-				+1.4
1,076,943	+				-0.6
1,076,943	+				+0.7
1,076,946	-				-1.2
1,076,958	+				+0.4
1,077,059	-		MMJJ_RS05780	0.20	-1.2
1,077,135	-		MMJJ_RS05780	0.32	+0.6
1,077,135	-		MMJJ_RS05780	0.32	-1.4
1,077,138	-		MMJJ_RS05780	0.33	-1.4
1,077,139	+				+1.4
1,077,145	-		MMJJ_RS05780	0.34	-0.6
1,077,145	-		MMJJ_RS05780	0.34	-0.2
1,077,146	+		MMJJ_RS05780	0.34	+1.4
1,077,320	-		MMJJ_RS05780	0.61	+0.4