Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS05655

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,054,832	-		MMJJ_RS05650	0.53	+1.4
1,054,988	+				+1.4
1,054,989	-		MMJJ_RS05650	0.65	-0.2
1,054,992	-		MMJJ_RS05650	0.65	-0.6
1,055,023	-				+0.4
1,055,024	+		MMJJ_RS05650	0.67	+0.4
1,055,139	+		MMJJ_RS05650	0.76	+0.2
1,055,240	-		MMJJ_RS05650	0.84	-2.1
1,055,240	-		MMJJ_RS05650	0.84	+1.4
1,055,241	+		MMJJ_RS05650	0.84	-1.2
1,055,570	-				+0.2
1,055,570	-				-1.5
1,055,571	+				-0.4
1,055,576	+				-0.9
1,055,598	-				+2.5
1,055,600	-				+1.7
1,055,602	-				-1.5
1,055,603	+				-1.6
1,055,608	+				+1.9
1,055,634	-				-2.4
1,055,639	+				+1.9
1,055,639	+				+0.6
1,055,684	+				+0.4
1,055,684	+				-0.9
1,055,731	+		MMJJ_RS05655	0.11	+0.4
1,055,750	+		MMJJ_RS05655	0.14	-1.9
1,055,753	+		MMJJ_RS05655	0.14	-1.1
1,055,779	-		MMJJ_RS05655	0.18	-1.2
1,056,058	-		MMJJ_RS05655	0.60	-1.4
1,056,059	+		MMJJ_RS05655	0.60	-0.2
1,056,059	+		MMJJ_RS05655	0.60	-0.9
1,056,059	+		MMJJ_RS05655	0.60	+0.4
1,056,070	-		MMJJ_RS05655	0.62	-0.9
1,056,161	-		MMJJ_RS05655	0.75	-2.1
1,056,161	-		MMJJ_RS05655	0.75	-0.2
1,056,162	+		MMJJ_RS05655	0.75	+1.4
1,056,189	-		MMJJ_RS05655	0.79	-1.8
1,056,189	-		MMJJ_RS05655	0.79	+0.7
1,056,189	-		MMJJ_RS05655	0.79	-0.9
1,056,189	-		MMJJ_RS05655	0.79	+0.4
1,056,189	-		MMJJ_RS05655	0.79	+1.2
1,056,190	+		MMJJ_RS05655	0.80	-0.6
1,056,190	+		MMJJ_RS05655	0.80	-0.2
1,056,190	+		MMJJ_RS05655	0.80	-1.2
1,056,190	+		MMJJ_RS05655	0.80	-1.9
1,056,206	-		MMJJ_RS05655	0.82	-0.6
1,056,270	+				-0.9
1,056,270	+				-2.3
1,056,275	+				-1.4
1,056,275	+				-0.2
1,056,324	-				-2.7
1,056,324	-				-3.3
1,056,325	+				+1.7
1,056,325	+				+0.7
1,056,328	+				+1.0
1,056,336	-				+0.3
1,056,337	+				+2.0
1,056,386	-		MMJJ_RS05660	0.10	-1.9
1,056,386	-		MMJJ_RS05660	0.10	+0.1
1,056,386	-		MMJJ_RS05660	0.10	+0.3
1,056,426	-		MMJJ_RS05660	0.18	-0.8
1,056,461	-		MMJJ_RS05660	0.24	+1.7
1,056,462	+		MMJJ_RS05660	0.24	+4.0
1,056,462	+		MMJJ_RS05660	0.24	+1.5
1,056,500	-		MMJJ_RS05660	0.31	+3.9
1,056,512	-		MMJJ_RS05660	0.33	-2.9
1,056,524	-		MMJJ_RS05660	0.35	+2.2
1,056,524	-		MMJJ_RS05660	0.35	-1.4
1,056,551	-		MMJJ_RS05660	0.40	+1.4
1,056,552	+		MMJJ_RS05660	0.40	-1.5
1,056,609	+		MMJJ_RS05660	0.50	-0.2
1,056,609	+		MMJJ_RS05660	0.50	-0.5
1,056,609	+		MMJJ_RS05660	0.50	-0.4
1,056,614	-		MMJJ_RS05660	0.51	-2.6
1,056,615	+		MMJJ_RS05660	0.51	-0.3
1,056,615	+		MMJJ_RS05660	0.51	-0.2
1,056,683	+		MMJJ_RS05660	0.64	-1.0
1,056,683	+		MMJJ_RS05660	0.64	-2.7
1,056,683	+		MMJJ_RS05660	0.64	-0.5
1,056,722	-		MMJJ_RS05660	0.71	+1.3
1,056,727	+		MMJJ_RS05660	0.72	+0.9
1,056,761	-		MMJJ_RS05660	0.78	-2.1
1,056,764	-		MMJJ_RS05660	0.78	-1.1
1,056,789	-		MMJJ_RS05660	0.83	-0.3
1,056,790	+		MMJJ_RS05660	0.83	+1.6
1,056,831	+				-3.0
1,056,831	+				+1.8
1,056,831	+				-1.5
1,056,851	-				-0.9
1,056,886	-				+2.4
1,056,890	-				-1.4
1,056,891	+				+4.7
1,056,969	-		MMJJ_RS05665	0.10	-1.3
1,057,070	-		MMJJ_RS05665	0.25	-0.6
1,057,071	+		MMJJ_RS05665	0.25	-0.6
1,057,092	-		MMJJ_RS05665	0.28	+1.1
1,057,092	-		MMJJ_RS05665	0.28	-1.2
1,057,092	-		MMJJ_RS05665	0.28	+1.2
1,057,093	+		MMJJ_RS05665	0.29	-1.6
1,057,115	-		MMJJ_RS05665	0.32	+2.2
1,057,116	+		MMJJ_RS05665	0.32	-1.4
1,057,116	+		MMJJ_RS05665	0.32	+1.2
1,057,116	+		MMJJ_RS05665	0.32	+0.1
1,057,120	-		MMJJ_RS05665	0.32	+0.8
1,057,121	+		MMJJ_RS05665	0.33	-2.0
1,057,124	-		MMJJ_RS05665	0.33	-3.9
1,057,124	-		MMJJ_RS05665	0.33	-1.2
1,057,125	+		MMJJ_RS05665	0.33	+0.4
1,057,125	+		MMJJ_RS05665	0.33	+1.6
1,057,147	+		MMJJ_RS05665	0.36	-3.0
1,057,172	-		MMJJ_RS05665	0.40	+0.4
1,057,172	-		MMJJ_RS05665	0.40	+1.3
1,057,172	-		MMJJ_RS05665	0.40	+1.2
1,057,173	+		MMJJ_RS05665	0.40	-0.4
1,057,261	-		MMJJ_RS05665	0.53	-0.3
1,057,262	+		MMJJ_RS05665	0.53	+2.5
1,057,262	+		MMJJ_RS05665	0.53	+0.5
1,057,278	-		MMJJ_RS05665	0.56	+1.2
1,057,282	-		MMJJ_RS05665	0.56	+0.3
1,057,282	-		MMJJ_RS05665	0.56	-2.4
1,057,325	-		MMJJ_RS05665	0.62	+2.3