Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS05590

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,041,838	-		MMJJ_RS05585	0.14	-2.8
1,041,838	-		MMJJ_RS05585	0.14	-0.4
1,041,850	+		MMJJ_RS05585	0.16	-2.8
1,041,944	-		MMJJ_RS05585	0.26	+2.2
1,041,944	-		MMJJ_RS05585	0.26	-1.5
1,041,945	+		MMJJ_RS05585	0.26	-2.8
1,041,945	+		MMJJ_RS05585	0.26	+1.9
1,041,945	+		MMJJ_RS05585	0.26	-0.7
1,041,945	+		MMJJ_RS05585	0.26	+1.3
1,041,945	+		MMJJ_RS05585	0.26	-0.4
1,041,946	-		MMJJ_RS05585	0.26	-3.1
1,041,946	-		MMJJ_RS05585	0.26	-1.8
1,041,947	+		MMJJ_RS05585	0.26	-0.2
1,041,949	-		MMJJ_RS05585	0.27	+0.7
1,041,950	+		MMJJ_RS05585	0.27	-1.8
1,041,950	+		MMJJ_RS05585	0.27	-0.6
1,041,951	-		MMJJ_RS05585	0.27	+0.6
1,041,951	-		MMJJ_RS05585	0.27	-3.1
1,041,952	+		MMJJ_RS05585	0.27	+3.7
1,041,952	+		MMJJ_RS05585	0.27	-1.8
1,041,952	+		MMJJ_RS05585	0.27	-2.7
1,041,952	+		MMJJ_RS05585	0.27	-0.5
1,041,954	+		MMJJ_RS05585	0.27	-0.7
1,042,223	-		MMJJ_RS05585	0.57	+3.3
1,042,250	-		MMJJ_RS05585	0.60	+3.0
1,042,255	-		MMJJ_RS05585	0.61	-0.1
1,042,345	-		MMJJ_RS05585	0.71	-2.2
1,042,373	+		MMJJ_RS05585	0.74	+1.0
1,042,385	+		MMJJ_RS05585	0.75	+3.6
1,042,466	-		MMJJ_RS05585	0.84	+3.7
1,042,497	-		MMJJ_RS05585	0.88	-2.6
1,042,622	-				-0.3
1,042,625	+				+1.1
1,042,750	-				+3.0
1,042,750	-				-0.4
1,042,752	-				+0.4
1,042,752	-				+2.8
1,042,753	+				-0.9
1,042,754	-				+1.9
1,042,754	-				+3.5
1,042,754	-				+3.0
1,042,754	-				+2.2
1,042,755	+				-1.6
1,042,769	+				+0.6
1,042,780	+				+0.8
1,042,786	-				+1.4
1,042,787	+				-0.9
1,042,823	-				+0.0
1,042,826	-				+1.3
1,042,838	-				-0.8
1,042,838	-				-1.6
1,042,839	+				-1.2
1,042,842	-				-4.0
1,042,878	+				-2.2
1,043,112	+		MMJJ_RS05590	0.29	-0.6
1,043,118	-		MMJJ_RS05590	0.30	-0.9
1,043,310	-		MMJJ_RS05590	0.49	-1.2
1,043,401	+		MMJJ_RS05590	0.58	-2.1
1,043,818	+				-2.4
1,043,898	-		MMJJ_RS05595	0.12	-0.9
1,043,924	-		MMJJ_RS05595	0.17	+2.1
1,043,924	-		MMJJ_RS05595	0.17	-0.6
1,044,139	-		MMJJ_RS05595	0.62	+1.4
1,044,140	+				-0.2
1,044,238	-		MMJJ_RS05595	0.82	-1.3
1,044,258	+		MMJJ_RS05595	0.87	+4.9
1,044,305	-				-1.2
1,044,349	-				-0.9
1,044,354	-				+2.6
1,044,354	-				+0.4
1,044,354	-				-0.2
1,044,354	-				-2.8
1,044,355	+				-1.5
1,044,355	+				+5.0
1,044,355	+				+0.9
1,044,355	+				+0.7
1,044,355	+				-0.9
1,044,355	+				+2.9
1,044,358	-				-1.5
1,044,359	+				-0.9
1,044,359	+				-0.0
1,044,362	+				+0.4
1,044,367	-				+1.1
1,044,378	-				-2.1
1,044,378	-				-1.1
1,044,378	-				+3.9
1,044,378	-				-1.4
1,044,389	-				-0.9
1,044,389	-				+1.1
1,044,390	+				-0.7
1,044,391	-				-1.2
1,044,392	+				+1.3
1,044,395	-				+0.5
1,044,451	+				-0.2
1,044,495	+				+0.1
1,044,541	+				-2.7
1,044,604	-				-0.1
1,044,605	+				-0.6
1,044,605	+				-1.8
1,044,698	+		MMJJ_RS05600	0.13	+2.5
1,044,698	+		MMJJ_RS05600	0.13	+0.9
1,044,700	-		MMJJ_RS05600	0.13	-2.1
1,044,701	+		MMJJ_RS05600	0.13	+2.2
1,044,781	-		MMJJ_RS05600	0.18	-0.8
1,044,781	-		MMJJ_RS05600	0.18	-2.9
1,044,788	-		MMJJ_RS05600	0.18	-2.3
1,044,789	+		MMJJ_RS05600	0.18	-3.7
1,044,810	-		MMJJ_RS05600	0.20	+2.3