Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS05560

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,038,473	+				+0.4
1,038,482	-				-1.6
1,039,292	-				-0.6
1,039,292	-				-0.2
1,039,293	+				+3.2
1,039,325	+				+2.5
1,039,337	-		MMJJ_RS05560	0.11	-1.5
1,039,338	+		MMJJ_RS05560	0.11	+0.1
1,039,388	-		MMJJ_RS05560	0.38	-0.5
1,039,388	-		MMJJ_RS05560	0.38	-2.0
1,039,389	+		MMJJ_RS05560	0.39	-2.5
1,039,416	+		MMJJ_RS05560	0.53	-1.8
1,039,487	+				-1.3
1,039,492	-				-0.7
1,039,492	-				-2.6
1,039,493	+				+1.8
1,039,493	+				-2.1
1,039,495	-				-2.7
1,039,496	+				+1.4
1,039,500	-				+3.5
1,039,511	+				-1.3
1,039,520	-				-3.6
1,039,520	-				-1.0
1,039,547	-				-1.3
1,039,547	-				-0.8
1,039,550	+				+0.2
1,039,557	-				+0.8
1,039,558	+				-0.3
1,039,571	-				+0.4
1,039,572	+				-0.9
1,039,594	+				-0.9
1,039,648	-				-1.9
1,039,765	-		MMJJ_RS05565	0.19	-1.4
1,039,767	-		MMJJ_RS05565	0.19	-0.6
1,039,819	+		MMJJ_RS05565	0.25	+0.4
1,040,100	-		MMJJ_RS05565	0.61	-1.2
1,040,456	+		MMJJ_RS05570	0.22	-1.2